Basic Information
Symbol
lnc-SNAPC3-11
RNA class
lncRNA
Alias
NFIB-AS1
AL136366.1
ENSG00000225472.1
OTTHUMG00000019570.1
RP11-120J1.1
Location (GRCh38)
9:14314232-14359244
Forensic tag(s)
Drug abuse diagnoses
External database
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| lnc-SNAPC3-11:1 | GCGAGCGCUGAUCUCUGGGGCGGAAGAGGCUCGCGGCGCGUGGUCCCCG… | 4605 nt | 0.5136 |
| lnc-SNAPC3-11:2 | AGAGGCUGCGGGCCCUGAGCCGCUCGGCGCCCGCGCCGGCUCCCCACCG… | 2025 nt | 0.5289 |
| lnc-SNAPC3-11:3 | CCAGAACCAGCCGUUGUCCCCUGGCAAAAAGAGGCCCAGGGCUGAGCCC… | 964 nt | 0.4295 |
| lnc-SNAPC3-11:4 | CCAGAACCAGCCGUUGUCCCCUGGCAAAAAGAGGCCCAGGGCUGAGCCC… | 1197 nt | 0.4177 |
| lnc-SNAPC3-11:5 | AGAACCAGCCGUUGUCCCCUGGCAAAAAGAGGCCCAGGGCUGAGCCCUG… | 962 nt | 0.4283 |
| lnc-SNAPC3-11:6 | AGUCAUAAAAGGAUACAUGCAGUAUGAUUUUAUUUAAAAAAAAAAAAAA… | 793 nt | 0.5725 |
| lnc-SNAPC3-11:7 | AGUGCCUUCGGGGGCUCCACCACCGCGCGCUCCCACCCUCAAGGUCUGC… | 800 nt | 0.4200 |
| lnc-SNAPC3-11:8 | UCGGGGGCUCCACCACCGCGCGCUCCCACCCUCAAGGUCUGCAGGACAC… | 793 nt | 0.4187 |
Summary
No relevant information is available at the moment.
Forensic Context
A study in human postmortem brain tissue identified the lnc-SNAPC3-11 as an OUD-specific hub long non-coding RNA in the nucleus accumbens co-expression network, implicating it in brain functions associated with opioid use disorder [Seney et al. DOI:10.1016/j.biopsych.2021.06.007].