Basic Information
Symbol
FENDRR
RNA class
lncRNA
Alias
AC009108.1
ENSG00000246979
ENSG00000268388.1
ENSG00000268388.5
XLOC_012046
linc-COX4NB-9
lincFOXF1
onco-lncRNA-21
Location (GRCh38)
16:86473638-86509099
Forensic tag(s)
-
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| FENDRR:19 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 969 nt | 0.5212 |
| FENDRR:2 | CAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGCGCCGGCAAG… | 960 nt | 0.5188 |
| FENDRR:20 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 3121 nt | 0.4681 |
| FENDRR:21 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 3211 nt | 0.4671 |
| FENDRR:22 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 3606 nt | 0.4634 |
| FENDRR:23 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 731 nt | 0.5499 |
| FENDRR:24 | ACUGCGCGCCAGGCCAGGUUCCUGAGAGCAGACAGCGCGGGCUGGGAGC… | 2630 nt | 0.5198 |
| FENDRR:25 | AUACUCAAACCCCAACCCCUGCCCGCCCCAGCCAGGAGGGGAGACGGUU… | 4093 nt | 0.4432 |
| FENDRR:26 | AUACUCAAACCCCAACCCCUGCCCGCCCCAGCCAGGAGGGGAGACGGUU… | 3164 nt | 0.4520 |
| FENDRR:27 | AUACUCAAACCCCAACCCCUGCCCGCCCCAGCCAGGAGGGGAGACGGUU… | 609 nt | 0.4943 |
Showing 11 to 20 of 30 entries
Summary
This gene produces a spliced long non-coding RNA transcribed bidirectionally with FOXF1 on the opposite strand. A similar gene in mouse is essential for normal development of the heart and body wall. The encoded transcript is thought to act by binding to polycomb repressive complex 2 (PRC2) and/or TrxG/MLL complexes to promote the methylation of the promoters of target genes, thus reducing their expression. It has been suggested that this transcript may play a role in the progression of gastric cancer. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Mar 2015]
Forensic Context
No relevant information is available at the moment.