Basic Information

Symbol
PAX8-AS1
RNA class
lncRNA
Alias
AC016683.6 ENSG00000189223 ENSG00000189223.13 ENSG00000189223.14 ENSG00000189223.7 ENSG00000189223.9 ENSG00000258395 ENSG00000258395.1 ENSG00000274877.1 OTTHUMG00000153340.3 OTTHUMG00000171056.1 RP11-65I12.1
Location (GRCh38)
2:113211516-113273699
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Drug abuse diagnoses
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
PAX8-AS1:1 AUGAGGCCCUCAAUGCUUGUCACUGACCUGGGUCACUACUGCGUCACAG… 1207 nt 0.5302
PAX8-AS1:2 GAUGGAGUCUUGCUCUGUCACCCAGGCUGGAGUGCCAUGGCGCCACCUC… 623 nt 0.5538
PAX8-AS1:25 GAGUUGUUUUUGUUGGAAACACUCUUUGUCAAGUACCUGGGGGUCUUCA… 1499 nt 0.4937
PAX8-AS1:26 CAUUUUAGAUGCCUCCUGGCCUCCCCUUCCCAGGAGCACAGCUAUGACC… 3231 nt 0.4717
PAX8-AS1:27 ACGGAGUUUUGCUCUUGUUGCCCAAGCUGGAGUGCAAUGGUGCGAUCUU… 2739 nt 0.4706
PAX8-AS1:28 CUCAUUCAUUUGUUCAUUCAUUCACUAUACCAUUACUGUCUAUUAUAAG… 582 nt 0.4880
PAX8-AS1:29 CCCUCUGGCCAAACACCCAGCAAGAAGGAUGCAAUGACCCAUCUUCCUG… 2394 nt 0.4749
PAX8-AS1:3 GAUGGAGUCUUGCUCUGUCACCCAGGCUGGAGUGCCAUGGCGCCACCUC… 529 nt 0.5614
PAX8-AS1:30 UUUCUUUUCAACUCAAGACAUUGACCAAGUGCCUAUCAUGACUCAGGUA… 2394 nt 0.4724
PAX8-AS1:31 GGUACAAAGCACUGGGAAUACAACCUUGAACAAGACAAGAAUCCUGGCC… 2313 nt 0.4756
Showing 1 to 10 of 16 entries
Summary

No relevant information is available at the moment.

Forensic Context

A study in humans identified PAX8-AS1 as a transcript significantly differentially expressed in the dorsolateral prefrontal cortex neurons of individuals with cocaine use disorder, with a log fold change of 7.90 in European-Americans [Huggett et al. DOI:10.1523/Jneurosci.2879-19.2020].