Basic Information

Symbol
SIX3-AS1
RNA class
lncRNA
Alias
ENSG00000236502.1 OTTHUMG00000152423.1 SIX3OS XLOC_002076 linc-PREPL-2
Location (GRCh38)
2:44940154-44942674
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Other applications
External database
HGNC NCBI Ensembl LNCipedia RNAcentral

Transcripts

ID Sequence Length GC content
SIX3-AS1:1 CUUGUCCACCGGGCCGAGUGGGCGGCCGCGCAGCUUCUCGGCCUCCUGG… 1138 nt 0.6476
SIX3-AS1:10 CUUAAUCUCGCUACCUCCCCCUCCUCUCUUCUCUCUUCUCCCUCUCUCU… 984 nt 0.5132
SIX3-AS1:11 CUUAAUCUCGCUACCUCCCCCUCCUCUCUUCUCUCUUCUCCCUCUCUCU… 550 nt 0.5200
SIX3-AS1:2 GCAGCUUCUCGGCCUCCUGGUAGUGCGCCUCGAGCCACAUGGCCUGCAG… 571 nt 0.6743
SIX3-AS1:3 GCUUGCCGUGAGACUCCUUGGUGAACUUGUGGUUCUCAAGGAUGUGGUA… 678 nt 0.6681
SIX3-AS1:4 GGUAGGAGAGCGGCCCGGUGCGCGCGCGCAGAGAGAGAACCCGAGACAG… 849 nt 0.4971
SIX3-AS1:5 GAGAGCGGCCCGGUGCGCGCGCGCAGAGAGAGAACCCGAGACAGAGAGG… 844 nt 0.4964
SIX3-AS1:6 UUUUUUUUAUCUUUGCAACUCUUAAUCUCGCUACCUCCCCCUCCUCUCU… 1000 nt 0.4870
SIX3-AS1:7 UUUUAUCUUUGCAACUCUUAAUCUCGCUACCUCCCCCUCCUCUCUUCUC… 1350 nt 0.5081
SIX3-AS1:8 UGCAACUCUUAAUCUCGCUACCUCCCCCUCCUCUCUUCUCUCUUCUCCC… 557 nt 0.5189
Showing 1 to 10 of 11 entries
Summary

Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Jul 2025]

Forensic Context

A study in mice demonstrated that depletion of the SIX3-AS1 leads to fewer Tuj1- and OLIG2-positive cells in a subventricular zone neural progenitor differentiation assay, indicating its role in neural differentiation [Flynn and Chang DOI:10.1016/j.stem.2014.05.014].