Basic Information
Symbol
BANCR
RNA class
lncRNA
Alias
ENSG00000278910.3
ENSG00000278910.4
LINC00586
XLOC_007724
linc-PRKACG-1
Location (GRCh38)
9:69296678-69311111
Forensic tag(s)
Other applications
Transcripts
| ID | Sequence | Length | GC content |
|---|---|---|---|
| BANCR:1 | GAACAGCCCAUGCUGCUGCUCUGCCUAUGGAGUAGCCAUUCUUUAUUCC… | 722 nt | 0.4349 |
| BANCR:2 | CCAUGCUGCUGCUCUGCCUAUGGAGUAGCCAUUCUUUAUUCCCUUACUU… | 567 nt | 0.4162 |
| BANCR:3 | AUUCCCUUACUUUCUUAAUAAACUCGCUUUCACUUUAUGGAUUCAACUG… | 675 nt | 0.4296 |
| BANCR:4 | UUCUUGUAGGGUCUGGAUUGGGACCCUUUUCUGGUAACAUCUUCCUGGU… | 452 nt | 0.4226 |
| BANCR:5 | UUCAGGGCGAUCAUCUUGCCCAGAAACAUCAUGUUGAAACUCUUGGUCA… | 473 nt | 0.4271 |
| BANCR:6 | UAAGGUCUUGUAAGCUGUCUCUGGCUUUUUCUUGGGCUGUGUGGAGGAA… | 558 nt | 0.4319 |
| BANCR:7 | ACAUAAUCAAGAAAUAACCAUAAGUAUCAACAGUGGAACAGCCCAUGCU… | 750 nt | 0.4280 |
Summary
This gene produces a long non-coding RNA that plays a role in tumor progression and epithelial to mesenchymal transition. This transcript acts through the MAP kinase signaling pathway. [provided by RefSeq, Dec 2017]
Forensic Context
A study in human esophageal cancer patients demonstrated that the BANCR was significantly up-regulated in cancerous tissues compared to adjacent normal tissues, with its expression statistically correlated with alcohol drinking and socioeconomic status [Aalijahan et al. DOI:10.1007/S12253-019-00711-3].