Forensic RNA Knowledge Base

Sequence Details

Symbol

DNAJC27-AS1:18

Sequence Length

343 nt

GC Content

0.5656

GACGUCAUCUGCAGGCCCUGGAGACGCGACUGCAGUUACCGAGUUUCUAAGGCCUCGUCCCCUGACGGGAAGGCGGCGUUGGGGGGCGGCUGGGUUUACCCUUCGAGAGUCCGUGUGAGAACCGGGACACCUGUCCUGUUGAAAAGGGGGACGCAAAAGCUGAAAAUGCCCGGAAGGAUAUGGCUUCCUUGAACUGCGGGACGUGUAGCUGCAGCUGUGGGGUGGACCAUGGAAACAGGUACCCAAAGUACCUUGAUAAAACACAUACCAGAGUAAGGGAAGGAGGAUGGGAAGGAGAGAGAUUCUAAGAAGAUGCAGGAGUUGGCCAGGCGCUGUGGCUCAC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-118.6 kcal/mol

Ensemble Metrics

Free Energy: -125.07

Frequency: 0.0000

Diversity: 85.68

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((.....((((((((....((..(((((......((((((((.((((((((((((((((((.........))))))))))))...))))))..(((((....(((((((((....(((((.((...(((((.((....)).)))))((....))......)))))))(((((.......)))))...((((((.........))))))((((((......))))))....((((((.....))))))........))))).((.......))......))))..)))))..))))))))........)))))..))...))))).))))))))))..

Thermodynamic Ensemble Prediction

{{.(((,,,.{({({{(((((....((..(((((..{.,.((((((((..,,(({((((((((((((.........)))))))))))),|,.((((((((((,({,,.((((,{((....}|{{||}|....(((((.((....)).)))))((...{||{,...,{|||||,{{({|...,,..)))),...{|,|||}.,,,.,}})),},)}}}.)))))))))).,)}...,((((((.....)))))},.......,.{,,.((........,....,.,,,))},.}}}..))))))))........)))))..))...))))).,)))))))}}..