Sequence Details

BLAST PRIMER
Symbol
KCNQ1OT1:7
Sequence Length
380 nt
GC Content
0.3842
GUUUUUGACAGGGAAAGGCAGAGCCAGAGUCAGGGCAGGCCCUGGGCGGGCUCCUAGAGAGCCCAACCACCCUCUAAUAAGGGGUGCUCUCCACCCUAUCUGAGGAGCAAUUGGGAUCUCCUAGGAAGUGAAACUGUUACGUAUGUCUUAUUACAGAAUUUCCAGUGGAGUGAUUCUGGAAGAAAUGUGUAUGGCAUGUUGUGACUGCUAUGUCUCAUGAAAUAUUUACGUUUUUAUGUAACUUUUUUCCAUUUUCAGAUCAUCUUUUAUUUUAACGCAAAAUGACAAUAUAUUUUUCAAUUAAUUUGCCCAAUAUCUGUGUUUAAAUGUUUUCUAAUGCACACACGUGUUUUAAACUCAUUAAAAAAAUAUGACUUAGA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-92.9 kcal/mol
Ensemble Metrics
Free Energy: -102.51
Frequency: 0.0000
Diversity: 110.6
Structure Visualization
Structure Prediction
MFE Structure Prediction
((((..((((.(.....(((((((((((....((((((((((.....))))(((((((((.(((((...(((((..((..((((((.....))))))))..)))).)...))))).))).)))))).((((.....)))).((((((.(((.(((...(((((((..........)))))))...)))))).)))))).((.(((......))).)).((((...((((((....))))))....)))).................(((((((.....)))))))....................))))))....)))).)))).............))).....).))))..))))((((.........))))......
Thermodynamic Ensemble Prediction
,,,{.,{{{{.({{,,{(((((((({({.,,,((({{,{|||,,...}))){((((((((.(((((...{((((..((..((((((.....))))))))..)))).)...))))).)))}}))))},{{{,.,,.((((({{(((((.{{,{(((...(((((((.,......}.))))))}...))))}}.)))))}.}}}}}).,....||}.|||((((...{{{{{{,,.,)))))),...}}},,,,,.,.||,.......{{{{{{{.....}}}}}}}........,,..........}))))}....)))),)))}..,||}}}},|,,.{{{{....)))),||},,.,|||.........}}},......
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