Forensic RNA Knowledge Base

Sequence Details

Symbol

LINC00113:5

Sequence Length

373 nt

GC Content

0.4450

GGGAAGAAGCCUUUAAUUGGGUGCUGCGGCCUGGGAGAUGGGAGAUCAGUCUCCAAUCCAUCUCCCUGGCCAACUAAAAUUAGGGAUUUAUGUGACAGGAAGAAAAGUAACCAUGUAUAGGAAAACAGGAAUUAGGGAGGGGUAAUGAAGCAGAGUUCAUCAAUAGGAAGCAGAUGGUUGGUUAGUUAAUAAUGGCAGGCGAGGGAUAUAACAUCUCAUUGUCCAGCUGUGUUGAUCUGGUGCUGGAUAUUAGACCUUCGUCAGACACAUAGACCAGUGGAACAGAAUAGAGAACCCAGAAAUUAGAUCACUCAUCUUCAACCAUCCAAUCUUCGACAAACCUGACAAAAAGCAAUGGGGAAAGGACUCCCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-93.3 kcal/mol

Ensemble Metrics

Free Energy: -101.93

Frequency: 0.0000

Diversity: 100.73

Structure Visualization

Structure Prediction

MFE Structure Prediction

.........(((.((..(((..(((..((((.(((((((((((((....))))....))))))))).))))..(((....)))......................)))..)))..)).)))....((((......((((((((..(((((..(((((((((...........)))))..............(((((.((((((((((.....))))).))).)).)))))...((((((((.((((......(((....)))...(((........)))................))))..))))))))))))..)))))...))))...))))......))))............(((((......))))).

Thermodynamic Ensemble Prediction

(((,.,...(((((..,{,{.((((..((((.(((((((((((((....)))),...})))))))).))))..({{....}}}...{{{.,{{..{,{{........,..}).|||,,},}....|||{...,..(((,,{{{.,((((,..,,,|}|||,.....,,,,..||||{{(({,,........{{(((.((((((((((.....))))).)))|)}.)))}},.{((((((((.((((......{{{.,,,}}}...(((........)))................))))..)))))))))}})..}}))))))})),..,))))......)))}.,....}))}.,,}|.}}))).}))))..