Sequence Details

BLAST PRIMER
Symbol
MALAT1:20
Sequence Length
352 nt
GC Content
0.3778
GGUAGGCAUUGAGGCAGCCAGCGCAGGGGCUUCUGCUGAGGGGGCAGGCGGAGCUUGAGGAAACCGCAGAUAAGUUUUUUUCUCUUUGAAAGAUAGAGAUUAAUACAACUACUUAAAAAAUAUAGUCAAUAGGUUACUAAGAUAUUGCUUAGCGUUAAGUUUUUAACGUAAUUUUAAUAGCUUAAGAUUUUAAGAGAAAAUAUGAAGACUUAGAAGAGUAGCAUGAGGAAGGAAAAGAUAAAAGGUUUCUAAAACAUGACGGAGUGGUAGGAUGAAACAAUUUGGAGAAGAUAGAAGUUUGAAGUGGAAAACUGGAAGACAGAAGUACGGGAAGGCGAAGAAAAGAAUAGAG

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-57.7 kcal/mol
Ensemble Metrics
Free Energy: -66.24
Frequency: 0.0000
Diversity: 118.31
Structure Visualization
Structure Prediction
MFE Structure Prediction
(((..((......)).)))..(((..(((((((..(((......)))..)))))))..(((((((....((...(((((((((((((..(((.(((............))))))..))).....(((..(((....))).)))..((((...(.(((((((((((......((((((............)))))).......)))))))))))..)...)))).))))))))))...))....))))))).........(.((((.((........)).)))).)...........((((..(((.....)))...))))..............)))...............
Thermodynamic Ensemble Prediction
(((..((......)).)))..({(..,,(((((((((,......|||{{,,,)))),.(((((((....,,...((((((((((,,{....,.,||,,,.........{{{{{{.........,{{{..{({.,..}||,|,,..{{|||.|({(((({{,,|||}}}|.,{{{{{,...{|||,..|,|}}}}...,....}}}}}}))))}..}}}})}}}.))))))))))...,,....)))))))....{|{..{.{{||,||........,}.||||........,...,{||{..,||...,,}))...,}.)))}}}}.}......))}...............
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