Sequence Details

BLAST PRIMER
Symbol
MALAT1:33
Sequence Length
424 nt
GC Content
0.3491
UAAAGGCAGAAAAGAUUAUAUGUCAUACCUCCAUUGGGGAAUAAGCAUAACCCUGAGAUUCUUACUACUGAUGAGAACAUUAUCUGCAUAUGCCAAAAAAUUUUAAGCAAAUGAAAGCUACCAAUUUAAAGUUACGGAAUCUACCAUUUUAAAGUUAAUUGCUUGUCAAGCUAUAACCACAAAAAUAAUGAAUUGAUGAGAAAUACAAUGAAGAGGCAAUGUCCAUCUCAAAAUACUGCUUUUACAAAAGCAGAAUAAAAGCGAAAAGAAAUGAAAAUGUUACACUACAUUAAUCCUGGAAUAAAAGAAGCCGAAAUAAAUGAGAGAUGAGUUGGGAUCAAGUGGAUUGAGGAGGCUGUGCUGUGUGCCAAUGUUUCGUUUGCCUCAGACAGAAACUUUGUCUGCGAACACUCUUUAAUGGACC

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-79.8 kcal/mol
Ensemble Metrics
Free Energy: -88.1
Frequency: 0.0000
Diversity: 123.68
Structure Visualization
Structure Prediction
MFE Structure Prediction
....((((............)))).....(((((((((((....(((((..(.(((..(((((((....).))))))..)))...)..)))))............(((...(((((((......((((((((...((......)))))))))).......)))).))).)))........................(((((...(((.((......)).)))...))))).....(((((((....))))))).......(((((..(((((.....((.(((((..(((...((((.((.((...((..((((.....((.....))...))))..))...))..)).))))....)))..))))).))..))))).)))))(.((((((((...)))))))).).....)))))))))))..
Thermodynamic Ensemble Prediction
....((((............}))).....(((((((((({...((((((.((((..(((((,,{((.,((((...(((.((((((,({{.,||......,,,,,.(((...,,...}}}...,,|||,,,{{,.{((..{{{.,,|{{{{|..{{,..,.|(({,{{||,,,,|..............,,..}}}}|{{{{...{{{.((....,,)).)))...))))}.....(((((((....))))))).......,,.............{((((......)))))..,..|}|},}...}}}..)))...,..,},..)))))))))...)))}})))))))..)).)).))))))|||||||||,|||||{|||||,.|((((({|...,)))))))}}.}}..}))))))))))..
Back