Forensic RNA Knowledge Base

Sequence Details

Symbol

PRKCQ-AS1:51

Sequence Length

499 nt

GC Content

0.3808

GGAGAAGCCUGGUUUGAGUGAGUUUUUCCUGAAGCAAAAGGGAAGAGCUUAAUUUCAAAAGAAUAUCUUGAAAGACGCAUCAACUCACCAUUAGAAAACAUGAAACGACAGAUUAUAUCCUAAGAUUGUGUGAACCUCUUACCUGGAAACCCGUACAAUUGCUUUAUCUACCAAUCCUAAACUAUUAUAUCUUGAUCUUUACUCAAUCCUAAUUACACACCCACAUUGAAAGACCUAUCUUAAUUCAGACUUCAAAAUCUUACAAACGUCCAAGUCCCUCCUUUGAAAUGCUACUAAGACUGCAGUAAGAAUACAUAGCAUGCAGUGACUGAGAGGAAGAGAGAUACUAACACUUGAAGUAAUCCAGUCUAUCAAUAGGAGAUGGACUGCUUUGAUUUAAAGCGAUUUACAAAAGGAUUUGGAUACCUCAUCUCUCCUGUUUCGCCAAGGUCUUGACUCAUCGCUGCAGAUGACUAAAUCCCAUUGAGCUAAAUCUCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.6 kcal/mol

Ensemble Metrics

Free Energy: -104.03

Frequency: 0.0000

Diversity: 157.4

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((..((.(((..(((((((((((((((.........)))))))))))).((((((.........))))))...........((((((((((.........................))))...)).))))..)))..))).))......(((.((((((((((.....................((((((..(((((.((((.((..................(((((((....)))...))))(((((...................)))))......................((((((((...........)).)))))))).))))..))))))))))).......((((((.....(((((((((.......)))))))))))))))..)))))))))))))...((((...((((.....)))).)))).....(((((((..((...(((((......)))))...))..)).))).))....))))).

Thermodynamic Ensemble Prediction

(((((,,{{{(({.{(((((((((((((((.........))))))))))),.{((((,.,{,...}})))))}...,..,,.}}}}}}}},,,,......,{{{{{{,.{{{{..,,,,,|{{{{{{{{||{,,,,}},.,,..||....,}{{{.{{{{({{{{{...................,,{{{{{{,.{{{{{.{{{|.{{..................{{{((({....})),...}}}|{,,,.....,,,,,.....{{{.|{||,....,||||,..,,,,....,,(((((({{.........,.}).))))))}}.}}}),,)}}}}}}}}}}.,.....||{{|||{,,,(((((((((.......))))))))),,}}},..)))))))))))})...||||,,,||||.....)))).)},}}}}}}{{{{{((..{{...(((((......)))))...},..)}.))).)),...))))).