Sequence Details

BLAST PRIMER
Symbol
PRKCQ-AS1:55
Sequence Length
400 nt
GC Content
0.3750
AAUUGCUUUAUCUACCAAUCCUAAACUAUUAUAUCUUGAUCUUUACUCAAUCCUAAUUACACACCCACAUUGAAAGACCUAUCUUAAUUCAGACUUCAAAAUCUUACAAACGUCCAAGUCCCUCCUUUGAAAUGCUACUAAGACUGCAGUAAGAAUACAUAGCAUGCAGUGACUGAGAGGAAGAGAGAUACUAACACUUGAAGUAAUCCAGUCUAUCAAUAGGAGAUGGACUGCUUUGAUUUAAAGCGAUUUACAAAAGGAUUUGGAUACCUCAUCUCUCCUGUUUCGCCAAGGUCUUGACUCAUCGCUGCAGGUUGUAUAAUUAGUCUCAUUAAUCUAGCAAAUGAUGGCAAAAUGCUUGGUAAUGAUGUCUAACUGGGGUUCCUUUCCAAGGAACCUU

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-80.1 kcal/mol
Ensemble Metrics
Free Energy: -89.42
Frequency: 0.0000
Diversity: 111.73
Structure Visualization
Structure Prediction
MFE Structure Prediction
....((.((((.((((((.......(((((((...(((..............(((((((.(((.((....(((((((....)))...))))..........((((((....(((..(((..(...........)..)))..)))....))))))..........((((((((.((((...((((.............(((((.(((..(((((((((.......)))))))))..))).))))).((((...(((..(((((..((...))..))).))..))).)))).....))))..)))))))))))))).))).)))))))..............))))))))))........)))))))))).)).......(((((((((...))))))))).
Thermodynamic Ensemble Prediction
....{{.{(((.((((({.......{{{{{{,...{{({.......,,,,..(((((((.(((,(,....(((((({....}}},..,}}}|,,{......{(((({....{((..(({..,......,....|..}}}..)}|,...}}}))}......,}|.{(((((((.(((({(({{(((({,,,,,,...,{({,.{({({{(((((((((.......))))))))|(((({...}))))}||,,,||...||||,,})},}},,}}})))}))}),,.,,||..,,}},}}..)))))))))))})),))).)))))))..,,,,,.,,,...,,,)))))}|,.....),)))))))))).)}......{(((((((((...))))))))),
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