Forensic RNA Knowledge Base

Sequence Details

Symbol

SNHG16:5

Sequence Length

556 nt

GC Content

0.4694

GUUCUUUUCGAGGUCGGCCGCGUGGCUGGAAGACAUGGCCACUCCAGUCGGUGUUGAGCACGGCGAGCAGUCUCAGGCCUUUAGUGAUGAUGGUGCAGUCAGCCUCAGUUUCCAAAGCCGGAAAAGGAUCCUCUAGUAGCCACGGUGUGGCAGCUGCUCUGAACCAGGACCUGGACCCGGACCCAAAGUGCCAUGUCUUUAAUGUGAGUAAGUAGACGAACUGGUAAACAGGCUUGGUUUGGUUUGGGGGAGUGGUAAUCUUUUUUGCUUCCCCUGCUCUGGACUUAAAGCAAUGGGGGCAGGGAGACUUUAGUAGCAUUUUGUUGCUAGGUGUCUGCAAUAAGAGACGAAACUGAACUGCUUUGCCGGAAACAAGUGAAAUGAUUGCUUUCCUGUUUGUAAGAUUUGUUUACAUCUUUCGUAUCCGUAAGAAGUCCCACAAGCCUAUGAUGGUUAGUUAUCCCUGUCUGAAAAUCUGGACUGAGGGAAAUAAUCUAUUCUGAGGCUUAAGGGUUUGGCUCCAUGGUUUUUUUUUUGUUUUUGUUUUUUUUCCCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-166 kcal/mol

Ensemble Metrics

Free Energy: -179.52

Frequency: 0.0000

Diversity: 203.98

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((((.((((((.(.(((((((.......))))))).)..)))))).)))))..(((((((((((.(((((((((((.((.....(((.(((..(((.((..(((((......)))))..)).....((((.(((((...))))).))))..((((((((((.((((...((((........((((((((.....))))).)))..........))))....))))))))))))))...((((((((((.........)))))))))).)))))).))).....)).)))))))..(.((((((((((((((...)))))))))).)))).)..............))))))))).))))))((((((((.(((((.((.(((........((((((.....))))))((((.((....)).))))...(((..((((((..((.(((((....(((((((((........))))..)))))..)))))...))..))))))..)))...)))...)).)))))...))))))))...............

Thermodynamic Ensemble Prediction

........,{{{{,(((((....||||}{({({,,{|{{{{{{{{.{{(|{{{|,,,}},}}}}(((((((,,,,((({{{{.,.,,{{{.(({.,.,.,.})}||,.||{|{,,,}}}|||,,..,.,,,.......(((((...))))).))))))).,.,||{{|,{||||||({(({{{,..,,||||||||||},.,{{{|{{{,.({,,{{{{|||{{{{{{{|||}{||||||}|||||||||||||||.,,,,,,.||||}}}|||((((((.,.,,...,,...,,)))))))|}((((((((((((({...}))))))))).)))).},,..,|||||{|||,,||{||}.}}}|||{{((({{({,,,.....}}},))))),}}}|||,||.}}}}))))),{(({.((....)).}))).,.(((..((((((..(({(({({,,,.((((((((({......,))))..))))),,))),)}},))..))))))..))),}}))}},,,,)))))...,,},},,,,,...........,,.