Forensic RNA Knowledge Base

Sequence Details

Symbol

SNHG18:6

Sequence Length

469 nt

GC Content

0.6205

CCCUUCCCGGUACAGGACCCCCACCUUCGCUCCUGGGAGCCCCGCUGCACCCCAGGAGUUCCAUUCCAGCCUCCCCAGUGCGAGUGCGGCCGAGCGCUGACUUUUGGGGGCUCCCUCCCCCGUCUCACUGGGUCCCUCUGCGGCUCCCCCGCCCGCUGUCCCGGUUCAGACGUGGCUGCACCCCGGAGGGGGGCGCCGGCCGAGACCUGAGACGUGGCGCUCCCUCUCUGCCGGCCUCGGCUUCAGUGCUUGAAUUUCAGCCACAUCCCUAAGCUGCCAUCUCAGACCAGAGGAACAGGGAGGGGGGCUUUCUGGAAAGAACAUCACCUGGAAGAAAUCAGGACAUGACUGUGGGCCAUGAGUGACCUUCAAAGGAAAGCCGGGUAUCUGUGGUCUUUAAGAUGUGCAGGAGAAUGUGAUUCCUUACCAAUGGAGGGGAUUCAGUUCCUCCAGGUCUGGCAACCCUGCA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-182.1 kcal/mol

Ensemble Metrics

Free Energy: -188.93

Frequency: 0.0000

Diversity: 191.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((.((((.((((....(((.((((((((((((.((......))..))))))))).........(((.((((..((.(.((((((((..(((((((.....(((((......))))).....((((((.(.....((((.....)))).....).)))))))))).))))))))))).)))..)))))))((((((.((((...(((.((...)))))..)))).))))))...((((..(((......)))..))))...........(((((((((.((((((.(((.((.(((((((..((((..(((.....((((((((((........))))...))).)))...))).))))..))))).........))..)).))).))))))...))))).))))..))).)))..))))))))...)))))))...(((..((....)).)))(((....))).

Thermodynamic Ensemble Prediction

{{(((((.((({.((({..,,({(,({{(((((((((.((......}}..)))))))))..,.,,,.,((({((({,{{{,{{(((({{{{,.|||||{,,...,(((((,.....}}|}|{{{{.((((((.{.....((((,....|})},,,,.}.)))))},,))})|||||||},},}}}|,})}}))}((({{{.|{{{...{{{.|{.}}})))),,}))).||||}}..}||||...{{|,||||....}))})}}.,,{{,..,|{|||,|{|}}}.,,}}}))...,)))})))))})},.||)},,,}.{{{{{.(((({......,)))),{{|...|},(((((((.{(..((((.....{{....))))))..)))))))))...,})))}|||||.},,,||}..}||}}}||...||||||}...{{{.,||,,,,)),}})|{|..,,))).