Forensic RNA Knowledge Base

Sequence Details

Symbol

SOX2-OT:10

Sequence Length

609 nt

GC Content

0.4466

AUUUGCUUUCAGCCGCAGAGAGAAGAAGCUGCCCAAGAAUGGAAAGGAAGAAAUAUAUCACAUCAUCUGUCUGUCCACAGGCUUUCCUUGGGGCUUAUGAAGUGAAUGAAGGAGGGAAGAAAGGAGAGACAGAGAAAAUAUGGAUUUCCUCAUGGUUGUGAUUCCUCUUCACUCUUUUGAAUUUGGAAGGAUGGCAUACACAUCUGAAAAAUACCACUACUUCCUUCAUUGGACUGCAAGGUAUUUCUGUUUGGAAAAGUAAUGGAGUCCAGUCAACUUCAUUGAUCGCCAAGGACUGUCAAAAUUAUAAAACUUGCUGUGGAGCUCUGACAUGCCAGAAGCCGCUAGAAAAAGAAGUUUGACAUUCAGAAACUUAUCAAGAGGUUCUACUCUUUGGAUAGAGACCAAAAUCAUACUUUGAAGGGAUUGCAGUGGCAAAGCUAGGCUAGGUCUUGGAGGCUGGUGUAAGGCGAUGUGGGUGAAGGCAGGAGGCUGAUGGAAAGACUGGGGGGAAGAAAAGCCGAAAUGGAUUCACGGUGCCUUGGAUGAAGGACGAGAGGGGAACUGCAAGCUCCUUCAACUGGUUCUGUCCGGUGAGAAGUGAUCAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-165.4 kcal/mol

Ensemble Metrics

Free Energy: -178.52

Frequency: 0.0000

Diversity: 219.42

Structure Visualization

Structure Prediction

MFE Structure Prediction

..(((((((..((((((((.(((.((..((..(((....)))..))................)).))).)))))((((((((..(((((((.(.(((((((((((((((((((((......((((((..((.........))..))))))..((..(((.((((.(((....((....))....))).)))).)))..))...................))))))))))((((((.((.....(((((....))))).....)).)))))).)).)))))).))).).)))))))..)).................)))))).((((((......))).)))............((((((.........))))))...(((((......))))).((((((((.(((..........((((((((.((((((((((........)))...(((((....((.((.(((((((......(((((..((...((((........................))))....))..)))))..))))))).))..))..))))).....)))))))..)))))))).))))))))))))))..))))))).....

Thermodynamic Ensemble Prediction

..(((((((,.(((((((,.,,,.,,..{{,,(((....}))..||{,,{,....,.|....||.|||,|||,|(({,,{{(,,(((((((.(.({(((((({{,,{{{{{(({{,..,..,((({|,,||,,.....,,))..))))))..{(,,({{.{{(({{{({{{.((,,..}}...,}}}.||||{},,..,.}}}}}........,,,,..))))))))||((((((.((.....(((((....))))).....)).)))))),},.,)))))|,,|,}.))))))}.,|||,,...........,,.||||||.{(((((......)))},})},},,,.....,{{{||||},,.}},,},,|||...{{(((......))))},{{||||{,,{({...,,,....{|||{{||.{(((({({((...,{|,.|||...|||||,.,}}},||.|||||||.}}},}|||||},||}..||{{,.|.,....|,||||,||,,....}))),...,|..}}}})||}|||}}|,,|{{{|{{|..|,{,...,)),},,,.))))))),,))))))))))))))..)))))}).....