Sequence Details

BLAST PRIMER
Symbol
SOX2-OT:112
Sequence Length
383 nt
GC Content
0.4778
GGGAUUGCAGUGGCAAAGCUAGGCUAGGUCUUGGAGGCUGGUGUAAGGCGAUGUGGGUGAAGGCAGGAGGCUGAUGGAAAGACUGGGGGGAAGAAAAGCCGAAAUGGAUUCACGGUGCCUUGGAUGAAGGACGAGAGGGGAACUGCAAGCUCCUUCAACUGGUUCUGUCCGGUGAGAAGUGAUCAAGCUUGGGCUGACAAGAGGCUCAGGGAGCCCUCACGUUCUUUCGCUUUUUUACCUGCCAAUCAAACUGCUACAAGACAACACCCUGAUCUGGCAUGGACAUAGAUCUGGAAAUACACCCUGUGUGGCAGUCAUUUAACACUGGUAGAUUUAAGUCUGAAAGCGUUAACUUUUGGAAUUAAAUUCUAAUUUAGAUUUAA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-107.9 kcal/mol
Ensemble Metrics
Free Energy: -115.88
Frequency: 0.0000
Diversity: 152.88
Structure Visualization
Structure Prediction
MFE Structure Prediction
.......(((((..(((....(((.((((...((((((..((.(((((((......(((((..((...((((........................))))....))..)))))..))))))).))((((((((.(((((...((((((((((((((.(((((......)))))..)))).))....)))))((((.......)))))))....))))).)))))))).))))))..)))))))......(((((((((((.......((.((((((.........)))))).)).........)).)))))))))..)))..))))).(((((((((.((((((((......)))))))).))))).))))............
Thermodynamic Ensemble Prediction
....{({(,.{,|||,.{({{.((((((((,.,,,|||||||,|,.|||,.,||{{,({,.((((({.{,,,{{..{{{{{(,((({(({......,{{{,....,|,,{{{|,.,{{|,|{{{{,,(((((.,(,((({,.{{...,},))))||..||,|}}}}}}))))),.,..)})),}...((((((((.......)))))))}...))))),})}))))))}})),,,,.))))))..}),.{|||||{{{.,....,..||.||||||},.....,.||||||,||.....,,..,,,)))}}}}}}....,.,}}}|}.{((((((((.((((((((......)))))))).)))))}}))).,}}})}}}},.
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