Forensic RNA Knowledge Base

Sequence Details

Symbol

SOX2-OT:20

Sequence Length

348 nt

GC Content

0.4023

UUGCAGUGGUCAACUGGUAUAGACAUCCCAUUACCACUACUUCCUUCAUUGGACUGCAAGGUAUUUCUGUUUGGAAAAGUAAUGGAGUCCAGUCAACUUCAUUGAUCGCCAAGGACUGUCAAAAUUAUAAAACUUGCUGUGGAGCUCUGACAUGCCAGAAGCCGCUAGAAAAAGAAGUUUGACAUUCAGAAACUUAUCAAGAGGUUCUACUCUUUGGAUAGAGACCAAAAUCAUACUUUGAAAAAAUGAGAAGAGAUGGAAGCCAAGGAAGGGUGUGUGGAAUCAAGUAGCAGUUCUCAAAACAGCAUAUAUCAAGACCUCAGCACAUAUCAAGACCUCAGCACAUAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-74.3 kcal/mol

Ensemble Metrics

Free Energy: -82.1

Frequency: 0.0000

Diversity: 99.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((.(.((((...(((((((......((((...((((.(((((((.((((((((.((.....(((((....))))).....)).))))))))..(((((.(((((.......((.(((((((.............((((((...((((......))))..)))).)).........))))))).))........))))))))))((((((((((..........((((.......)))).........)))))).))))....))))))))))).)))).........((.(((.....))).)).))))))).)))).).))).......................

Thermodynamic Ensemble Prediction

.(((.(.((((.,,(({(((.....,.{{{,,||({{,.(((((((.{(((((((.((.....(((((....))))}.....)).))))))}}.,{((((.(((((.......((.(((((({.,,......,{,.{{({((.{{((((......)))}.}))}).)}.....,,}.))))))).))........}))))))|}|{(({((((((,,.......,|||,.,{,...||}}......,..)})))).)))},.,,)))))))))})|)})),.,...|||{|,|||.....,}}.}}.,}},,...}},,.,.})}.,,.....}}}}.,.}}}.....