Forensic RNA Knowledge Base

Sequence Details

Symbol

SOX2-OT:23

Sequence Length

454 nt

GC Content

0.3943

UCCCCUCUAGCCACUACUUCCUUCAUUGGACUGCAAGGUAUUUCUGUUUGGAAAAGUAAUGGAGUCCAGUCAACUUCAUUGAUCGCCAAGGACUGUCAAAAUUAUAAAACUUGCUGUGGAGCUCUGACAUGCCAGAAGCCGCUAGAAAAAGAAGUUUGACAUUCAGAAACUUAUCAAGAGGUUCUACUCUUUGGAUAGAGACCAAAAUCAUACUUUGAAAAAAUGAGAAGAGAUGGAAGCCAAGGAAGGGUGUGUGGAAUCAAGUAGCAGUUCUCAAAACAGCAUAUAUCAAGACCUCAGCACAUAUCAAGACCUCAGCACAUAUCAAGACAGUGGCACAAAAGCAUCGUAGUGUUGUCAUUCACCACUAUGCAGGAGGGAAAGCCAAUUUCAUUUCAGAAUGUCCUCAAUUAAUCUGUAGAAAUUAUUAAUUUUAUUAAAUCCCAACCCUUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-91.9 kcal/mol

Ensemble Metrics

Free Energy: -101.22

Frequency: 0.0000

Diversity: 108.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((.((((((.((((..(((((......((((((((.....(((((.....(((((((((.......)))))))))....)))))((.(((((((.............((((((...((((......))))..)))).)).........))))))).))......((((((((((......)))))..)))))...........))))))))....))))))))).((((...((..(((...((((((((.......(((((.(((.....))).)).))).............))))))))....)))..))...)))).....))))))......((((.((.(((........))).)).)))).))))))......((((((....((((.((........)).))))..))))))............................

Thermodynamic Ensemble Prediction

..((((((.((((((.((((,,({((({{{{{.((,,,{,(((((..,,||}},..{,,||,|||}}}}}.,|||||,|||{{..,,,,,((.(((((((.,,......,{,.{{({((.{{((((......)))}.}))}).)}.....,,}.))))))).))......,,||||||||}}|,,.|||||,,|,,}},,.,},,..,,|,,}}}))....,}}}})))).{{((...((..(((...((((((((,..,,..(((((.(((.....))).)).}}).....},..,...))))))))....)))..))...)))).....))))))......(({{.((,(((.,,.....))},)),)))).))))))......((((((....((((.((........)).))))..))))))............................