Forensic RNA Knowledge Base

Sequence Details

Symbol

SOX2-OT:6

Sequence Length

507 nt

GC Content

0.3984

GGUCUGCUGGAGUUUGCUGGAGGUGCACUCCAGACUCUGUUUGCCUGCCUAUCACCAACAGAGGCUGCAGAACAGCAAAGAUUGCUGUCUGUAACUUCCUCUGGAAGCUUCAUCCCAGAGGGGCACCUGCCAGAUGCCAGCCGGAGCUCUCCUCUAUGAGUGAAUGAAGGAGGGAAGAAAGGAGAGACAGAGAAAAUAUGGAUUUCCUCAUGGUUGUGAUUCCUCUUCACUCUUUUGAAUUUGGAAGGAUGGCAUACACAUCUGAAAAAUAGUAAGUAAUGUGUGAUUUAUUUUUCAAUUACUGUUACUAAUUGUAAUAAAGCUGAAAUUUGAUUACUGGAGGAGUUUGAAAUCAUCAUGCAUGCCUUGAAGGAAAAUGGGUUUUGUGAAACAUUUGCAUUAUUUGGUGUGAAUUACCUUUGGUGUGAUUUAACUGUUUAUCACACAAUUACUGUUGUGAUAAUGAAUGUGUUAUUCACUAUUGCUAAAUUUACCCAGUAUAUUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-139.1 kcal/mol

Ensemble Metrics

Free Energy: -151.51

Frequency: 0.0000

Diversity: 189.53

Structure Visualization

Structure Prediction

MFE Structure Prediction

........(((((.((((((((((((........(((((((.(...........).)))))))..((((((.((((((...))))))))))))...((((((((..........))))))))))))))..((((((((....))..(((((((.(((......))).))))))).....((((((..((.........))..))))))..((..(((.((((.(((....((....))....))).)))).)))..))))))))...((((((((....((((((((..((.....((((((((((((.....))))))................((((((((((((((..((((..((((...(((...))).(((((..((....))..)))))))))....)))).)))))).)))))))))))))).....))..)))))))).))))))))((((((.((((((...)))))).)))))).........)))))).))))).

Thermodynamic Ensemble Prediction

{.{,((((((.{{,,.((((((,,,,.}}}}}}.(((((((,{...,.........})))))),,(((((,{((((({...})))))))))))...,(((((((........,.)))))))|||}}}},))})}}.))}}},}}}.{((((((.(((......))}.))))))}.,...((((((..((.........))..)))))),{{({{{,,{({(({({{|||,||.,,{|,,,,{,},,||{{{,....,.}}}}}....,||,,,.{{{,{||,(((({{,{..{{{{|,||,,{{(({(.....))}}}}.,..}}}}}.,}})}}}},}))))))}}...,}}}}},|,||{.,||{,..,}}.,,|||,||,.,{|||,.}||}}}}||{,,,{((|{||{{{|,,|..{{((({{{,.,{{{.{{{{{{||((({,{...,)}})))}}}}}}}}}}.}})),))))}}..),,,}}}}})))))),}..,,},.