Forensic RNA Knowledge Base

Sequence Details

Symbol

THUMPD3-AS1:4

Sequence Length

240 nt

GC Content

0.4958

GCGGAAGCCGCCGGGGCCGCCUAGAGAAGAGGCUGUGCUUCGGCGCUCCGGCUCCUCAGAGAGCCUCGGCUAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUGAAGUUGCUGUGAACAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-68.1 kcal/mol

Ensemble Metrics

Free Energy: -73.64

Frequency: 0.0001

Diversity: 60.18

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((.(((((((((((((.......)))).).))))))))))))))..(((.((...(((....)))...)).))).((((.((....(((((............((((.(..((......))..).))))...(((.(((..(((....)))))))))(((((((((((((((..(......)..))))))))))))))).((((...)))).)))))....)).))))......

Thermodynamic Ensemble Prediction

,(((,,(,{(((((((({((((.......)))).}.)))))))))))))},|(((.((...(((....)))...)).))).((((.((....(((((...{,,..{,..{(((,{..{{...,..}}..|.}))},|.{(({(({..(({....})},,,,})|||{{{{{(((({({..{......)..}}}})))}})))))).||{,...,))),)))))....)).))))......