Forensic RNA Knowledge Base

Sequence Details

Symbol

THUMPD3-AS1:57

Sequence Length

544 nt

GC Content

0.4467

AGAGAGCCUCGGCUAGCUGGGAUUCUGUCCCUGACCGUCUUCACAGUCCAGGUGAUCUUGACUACUGCUUUACAGAGAAUUGGAUCUGAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUUGCUCCUUGAGGGCAGGACAGUUCUUAUGGCUUUAUCCGUUGCGUAAGCACAGAGAGGUCUGCGAGGUCAAAACUAUUGUCAUGAUAGCAAGAUGCCUGUCUUUUUCAUUUAUUCUCACGGUGUGCAGAGGCUACAUGAUGUGUGAUGACAUCCUCAUUGAUGUUAAUGAAUGGUGCUAUACUUGAAUUUUCUAAGGUGUCAUUAGAUGAGGUCUUGCUGUGUUGCCCAGGCUAUUCACAGCUGCCAUCAUAGUGAACUACAGCCUGAAACUCCUGGGUUCAAGAGAUCCUUCUGCCUCAGCCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-148.4 kcal/mol

Ensemble Metrics

Free Energy: -160.9

Frequency: 0.0000

Diversity: 236.21

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((....))).((((((...(((.((((.(.((((((((.((((.(((....)))))))..((((((((..((..((((.(((....(((....))).....))).))))..))....)))))))).))))))))...(((((..((.((..((((((..(((....)))....)))))).)).))..)))))....((((((....(((((.((((......)))).)))))..))))))..).)))))))((((((..((.(((((((......(((....)))((((....)))).))))))).))..))))))...((((((((..((((((((....(((((((((.((((((((((....)).))))..)))).))(((((((......))))))))))))))(((..((((((..........))))))))).)))).))))))))))))...(((((((...((((..((((...(((...)))....)))).))))...))))))).....(((....)))..))))))..

Thermodynamic Ensemble Prediction

.{,,{((,,,,|||.({{(((((,,,|||||{{,,((((((({,((({,(({...{||||}||,,,(((({{({{(,..,{{{.|||,,,,|||}}...)),},..)}}.))}}.,)),,,,)}}}||||.||||||||.,,|{{.,.,||.{||,|{{||{..|||....,||,{,{||||||,|||||,,{||||{||.{(((((....(((((.((({......)))).)))))..))))))}}}}}||||||{(((((..{,.{((((((,,{...{((....))}{(((.{{{||||,,,,||||..|{.,,,)),.}|||,|||.}..}}))}))),,,}|||||||||.{{||||{{{{.,,,)),}}}}..||}},}|{((((((.,,,,,}}}}})}))})}}||||,,.|||{{,,....,,..})}}}}}}|||}||||||||,,|||||,..((|{{((|..{{||,,||{|,,.||,,.,))}....}))),)}}}...})))))),)}}}}}},}}}}}}}}))),)),.