Forensic RNA Knowledge Base

Sequence Details

Symbol

THUMPD3-AS1:60

Sequence Length

496 nt

GC Content

0.4698

GACUCUCGCGUUGCCCCCUGGGUGGGGCGGGUAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUGAAGUUGCUGUGAACAUUGUUAAAAUGCCAAUAAAGGAUUUAGGAAUUACAGAAACCUGGUUGAUAAAGCAGUGCCAGGGUGUGAGAGAGUUGACUUCAAUUUUGAAAUAAGUUCCACUGGCUGGGUGUGGUGGCUCACACCUGCAAUCCCAGUACUUUAGGAGGCCGAGACUGGUAGAUCAUUUGAGGUCAGGAGUUCAAGACCAGCCUUGCCAACAUGGUGAAACCCCACCUCUACCAAAUUAGCCAGGUGUGGUGCACACCUGUAGUCCCAGCUACUUGGGAAGCUGAGGCAGGAGAAUCUCUUGAACC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-144.3 kcal/mol

Ensemble Metrics

Free Energy: -154.03

Frequency: 0.0000

Diversity: 191.83

Structure Visualization

Structure Prediction

MFE Structure Prediction

...(((((.(((.(((..(((.((((((.((((((.((((...(((..............)))((((((.((((.(..((......))..).))))((((((((((..(((....)))....)))))..)))))......(((((..((......(((((.((((......)))).)))))......(((.((((((...((.(((((...((......)).))))).)))))))).)))(((.((....)).))).((((((((((...(((((((....)))))))...)))....)).))))).((((((((....)))))))))).)))))..)))))).(..(((.(((.(((((.((.(.((((....)))).).))...))))).))))))..)..(((...))))))).))))))........((((((((...))))))))..)))))).)))...))).))))))))((((((...))))))....

Thermodynamic Ensemble Prediction

..,((((({{((,((({.{{{.{|||||,{{((((.((({...{((........|,....|||,.,{{..,((({{..,|,}}}..}|{{{,|}||({,(((((((,,((,....,,,....}}||||{|||||{{{{{.,(,,,..,|..,}}}|||||}||||}..,.,}}}},)}|||,,,...{{|.(((((,..|((.(((((,,.((......)),))))).))))))))..}|((({((....,,.))}.||||||{{{|,,,{{{{(((....)))))))...,},..,,||.}}}||,(((((((({{..,}}))))})),.,)))}}).||,,.|,,|({{{,{.|||||.}}}}},|||}}}}))).,}}))|,,|}}}}.||||||.....||||...,,}))),}}}}}}....,,,.((((((((...))))))))..}|||||.}},..,))),,))))))}((((((...))))))....