Forensic RNA Knowledge Base

Sequence Details

Symbol

THUMPD3-AS1:64

Sequence Length

534 nt

GC Content

0.4981

GCCGGCCGAGACUUCUGGAUGGCGGCGGCCGCGGCUCCGCCCCGGGUUCCCACCGCCUGAAGGGCGAGACAAGCCCGACCUGCUACAGGUGUGGAAACAGGAAGAGAACUAGAACUGGAAGUAAAGCAUUGAAGAUGUGACUGAAUUGCUGCAAUCUCAUGAUCAAAUUUGAAUGGAUGAGGAGUUGCUUUUUAGGGAUGAGCAAAGAAAGUGGUUUCUCGAGAUGGAAUCUACUGGUGAAGUUGCUGUGAACAUUGUUAAAAUGCCAAUAAAGGAUUUAGGAAUUACAGAAACCUGGUUGAUAAAGCAGUGCCAGGGUGUGAGAGAGUUGACUUCAAUUUUGAAAUAAGUUCCACUGGCUGGGUGUGGUGGCUCACACCUGCAAUCCCAGUACUUUAGGAGGCCGAGACUGGUAGAUCAUUUGAGGUCAGGAGUUCAAGACCAGCCUUGCCAACAUGGUGAAACCCCACCUCUACCAAAUUAGCCAGGUGUGGUGCACACCUGUAGUCCCAGCUACUUGGGAAGCUGAGGCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-163.4 kcal/mol

Ensemble Metrics

Free Energy: -174.85

Frequency: 0.0000

Diversity: 191.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

(((((((...((((((((..(((((.(((....)))))))).((((((.....(((((...))))).....)))))).((((((((....))))...)))).............))))))))...(((((...)))))..(((((.((((((((((((((..(((....)))....)))))..)))))......(((((..((......(((((.((((......)))).)))))......(((.((((((...((.(((((...((......)).))))).)))))))).)))(((.((....)).))).((((((((((...(((((((....)))))))...)))....)).))))).((((((((....)))))))))).))))))))).)))))..)))).....(((((((........(((.(((.(((...)))...))).))).....((((......)))))))))))..(((((((((((((...))))))))...((((((....)))))).))))))))..

Thermodynamic Ensemble Prediction

((({{((,{,.,..,,},.,)|)||},(((.{((({,,|||.((((({.....(((({...))))).....})))))....{(((((((((((....{((........,,....||},.,{,...(((((...}}})}..}|((({{,({(,.((((((({{((.....,,.....,}{|{{{{{{(((((((..(......}..}}}}|||||}}||}}.,,.,|||||}||||,,,,..{{{.((((({..,((.(((({,,.((......)),))))).))))))))..}|((({((,...,,.}}}.||||||{{{(...(((((((....)))))))...}}}..,,)),))}||,((((((({,,..,}}))))})),.,)))}}}.{||..|,.|{{{{,,.||}}|.}}}}},,|))}}}))).})))),..|||||,||||||,...|||||,..,,.||||||||,,...,)}),.))))},))).)))))))))))|(((({....,)))),))))).)))..