Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-BMP6-106:117

Sequence Length

500 nt

GC Content

0.3600

AUGGGGGUGGAACUCAUGAUGGAAUUGGAGCCUUUACAAGGGAAUGAAGAGACAAGAGCUCUCUUUAUGCCACGUGAGGAUACAGCAAGGCCCCAAUCUGCAAGCCAGGAAGAGUCGUCACGAGAACCAGACCAUGCAGGAACUCUGAUCGUGGACAUUUCAACCUCCAGAACUGUGAUCCAAAAUGCAUAUGUAUCUUUGGAAGAAACUCUGAAGUAAAGGCCGGAAUAUUCUUUGUUUAAAACAUUAAAAACAAAACAGACCAAAGCAUCAAGCAAGAAGUUUCCUGGCAAUAAACUAAGCACAGCAUUAUUUUUUAAGGAACACAAAUUAAGUGUUCAACCUGUGGCAAAUUUGUACUUUCUCCCUGAAUUAUGUUGUUAUCAAAGAAAAAAAUUGGGAAGCAUGGCAAAAUAUCAUCAAAACUGAAACUAGAAUUAAACAAAACUAAAUUAAAAUGAAAUAAAAUGAUGUCCAUUCUUAAAAAAAAAAAAAAAAAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.3 kcal/mol

Ensemble Metrics

Free Energy: -109.22

Frequency: 0.0000

Diversity: 133.51

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((((((..((((((((...((((.((((((((...((.((((((((((....).))))))))).)).(((((.(((.(..(..(((............)))..)..).))).))))).....((((((((((((.....)))..)))))(((.(((........))).)))..((((((((((....)))).))))))......))))..))))))))..........(((((((..........))))))).....))))..))))..((.....(((((((((.............(((((((.((((....(((((.(((((((...((((........)))))))))))..)))))....)))).)))))))...............)))))))))...)).........(((....)))......................................))))..)))))))))).................

Thermodynamic Ensemble Prediction

.((((((((((.,(((({{(({.,(({(.((((((((..,((.{(((((((({....}.))))))))).)).{{||{.{{{.,..{.,|||.,|},,.,,...|}},.|..|.}|}.}||||,....,,{,(({{{{{||...}))).,)))))||,.|||......{{||..,||..((((((((((....)))).))))))..,...))))..}}}}}}|||{{{{..{||(((((((..........,}}}}},..........{{.....}},,}}},,}}}||||}..........,|((((,,,.,,,,....,,((((((.......))))))...}}}})}},..|||||...,,||{{{.,,,|..,,|||,...,,,,........,,)))),},..,)),,,...,}}||,....||,...,,,................................)))).,)))))))))).................