Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-BMP6-106:118

Sequence Length

485 nt

GC Content

0.3711

AUGGGGGUGGAACUCAUGAUGGAAUUGGAGCCUUUACAAGGGAAUGAAGAGACAAGAGCUCUCUUUAUGCCACGUGAGGAUACAGCAAGGCCCCAAUCUGCAAGCCAGGAAGAGUCGUCACGAGAACCAGACCAUGCAGGAACUCUGAUCGUGGACAUUUCAACCUCCAGAACUGUGAUCCAAAAUGCAUAUGUAUCUUUGGAAGAAACUCUGAAGUAAAGGCCGGAAUAUUCUUUGUUUAAAACAUUAAAAACAAAACAGACCAAAGCAUCAAGCAAGAAGUUUCCUGGCAAUAAACUAAGCACAGCAUUAUUUUUUAAGGAACACAAAUUAAGUGUUCAACCUGUGGCAAAUUUGUACUUUCUCCCUGAAUUAUGUUGUUAUCAAAGAAAAAAAUUGGGAAGCAUGGCAAAAUAUCAUCAAAACUGAAACUAGAAUUAAACAAAACUAAAUUAAAAUGAAAUAAAAUGAUGUCCAUUCUUAAU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-98.3 kcal/mol

Ensemble Metrics

Free Energy: -109.19

Frequency: 0.0000

Diversity: 129.76

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((((((((..((((((((...((((.((((((((...((.((((((((((....).))))))))).)).(((((.(((.(..(..(((............)))..)..).))).))))).....((((((((((((.....)))..)))))(((.(((........))).)))..((((((((((....)))).))))))......))))..))))))))..........(((((((..........))))))).....))))..))))..((.....(((((((((.............(((((((.((((....(((((.(((((((...((((........)))))))))))..)))))....)))).)))))))...............)))))))))...)).........(((....)))......................................))))..))))))))))..

Thermodynamic Ensemble Prediction

.((((((((((.,(((({{(({.,(({(.((((((((..,((.{(((((((({....}.))))))))).)).{{{|{.{{{.,..{..|||.,|,,,.,,...}}},.|..|.}|}.}||||,....,,{,(({{{{{||...}))).,)))))||,.|||......{{||..,,|..((((((((((....)))).))))))..,...))))..}}}}}}|||{{{,..{||(((((((..........,}}}}},..........{|.,...}},,}}},{}}|||||}..........,{((((,,,.,,,,....,,((((((.......))))))...}}}})}},..|||||...,,||{{{.,,,|.,,,|||,...,,,,........,,)))),},..,)),,,...,}}||,....||,...,,,................................)))).,))))))))))..