Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-CDH10-6:2

Sequence Length

369 nt

GC Content

0.4363

CUCAGCCCGCCUGCACCCAGGUGAUUAAAAGCUUUAUUGCUCACACAAAGCCUGUUUGGUGGUCUCUUCACACGGACGCGCAUGAAAGAAAUUACUUUUUUUCAAGAAUGAGUUCAUGUCCUUUGCAGGGACAUGGAUGAAGCUGGAAGGCACCAUUCUCAGCAAACUAACACAGGAACAGAAAACCAAACACCGCAUGUUUUCACUCAUAAAUGUGUCCGCAUUUGGUACAACGUUCGUCAAAGAGGAUGAGGUUACCGGGAUUGUCACUGAUGUGUUUAAAUGACUGCGCCAGCCUCCAGAGAAUAAGAUCUGUAUUCAUUGAUUCAUUUAACCAAUAUUCAGGUGACUACCACAUGCAAUACCACA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-90.8 kcal/mol

Ensemble Metrics

Free Energy: -99.35

Frequency: 0.0000

Diversity: 85.8

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......((((((....))))))......(((......)))...........((((((((..(((.(((...((....))..(((((((((....))))))))).......((((((((((((...))))))))))))...(((((((.......))).))))............))).)))..))))))))..((((((..........((((((....))))))((((..((.((((((......))))))))))))((....((((((((..((.((((((((..((....))...(((.(((((.......))))).)))..)))))))).))....))).)))))..)))))))).........

Thermodynamic Ensemble Prediction

.......((((((....))))))......,({..,,,,||,.....,,,||.{(({((((,,({{.{{{.,.{(,,,,|},.(((((((({....})))))))).,..{,.((((((((((({...}))))))))))}...(((((((.......))).))))...........,}}}.}||..||}}}}},..{{{{||,,.|,|......,|))),,.)}}},|((({,.,(,((({{{.....,))))},))))))|(,...(((((((({(((.((((((((..((....))...(((,{{{{,...,,,,}}}}}.}}}..)))))))).}}}))}))}))))))..)),,,,)),,.......