Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-CDH10-6:4

Sequence Length

426 nt

GC Content

0.5235

GCUCACACAAAGCCUGUUUGGUGGUCUCUUCACACGGACGCGCAUGAAAGGUUAAAAGAAAACUGAAAUGGGAAGGAAAAUCAGCCAAACAUAAACAAAAAAGAAGACAAGAGAAGAGUGGAACAAAUCAGAGUUAAAAAAAUAAUUAUAGGCCCGGCGCGCUGGCUCACGCCUGUAAUCCCAGCACUUCGGGAGGCCGAGGGGGGCGGAUAACGAGGUCAGGAGAUGGAGACCAUCCUGGCUAACACGGUGAAACCCCGUCUCUACUAAAAAUACAAAAAAUUAGCCGGGCAUGGUGGCGAGCGCCUGUAGUUCCAGCUACUCGGGAGGCUGAGACAAGAGAAUGGCGUGAACGCGGGACGCAGAGGUUGCAGUGAGCUGAGAUCGCGCCACUGCACUCCAGCCUGGGCGACAGGGCAAGACUCC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-126.1 kcal/mol

Ensemble Metrics

Free Energy: -132.25

Frequency: 0.0000

Diversity: 123.74

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((((....((((((((((((((.....)))).))))).(.(((....((((.......))))...))).)...........((((..(((.............................(((........)))................(((((((..(((((...((....))....))))).((((((....))))))(((((((.......((((((((..(((...))))))))))).....(((...)))))))))).....................)))))))))).))))..((((((((.((((..(((((((((....))))).........))))..))))))))).)))..)))))...)))))).(((.((..(((.((((.(((......))).).))))))..))))).

Thermodynamic Ensemble Prediction

((((,,....,(((((((((((((,.,,,||,}.||}}}.|,(((....((((.......))))...))).),,}}....}}.||||,,|,................,..,,{.,{..{{{{{{....,..,{{{{......}}}}}....(((((((..(((((,..{{,,,.}}....}}}}}.((((((....))))))(((((((.......((((((((..(((...))))))))))).....(({...}))))))))).....................))))))),,||||}}..{||||{{{.||||},{||,|||,{.,,,|||}|......,..||||{{||,|,|||}.|||..,}}}}.,.))),}),|,|.||},|||,||{,.|}||}}}}})))},.,,))))..,,,,,.