Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-HMBOX1-11:1

Sequence Length

568 nt

GC Content

0.4613

GUGGGCAAAGGGAAGGUAAAACAUCCUCAUAUGCAACCUCUGUGCAAACACAAGUGGCGGCAGCCAGAGGCUUCAGUCAGCUCCUCAGAGCUUCCUAAGAAGUGCUCAGGAGUUGGAAGGUCAUGUCUGCAAAGAGAAGAAAAUCUGCAGACAUGGCAAAGGCAGAAAAAGAAAUGACAAGCUCCGUCCCUACUACAUGGAACACAAAAAAGAAGUUCCAGGAUCCCAACGCACCAGAGAAGGAGCCUCCUUUGGCCUUUUUCUUGCUCUGUCCUGAGCACUGACCAAAAAUUAAAGGAGAACAACCCAGCCAAUGCACUGGCGAUGUUGGAAAGAACUGGGCAAGAUGUGGAAUAAUAACGCUGCUGCCGAUGCCAGGCAGACCCAAGACCAGAGGGCUGCUAAGCUGAAAGAAAACACAAAAAGUCUAUUACUGCAUAUGAACUCAAGAAAAGCCUGAUGGGGUGAAAAAGGCAGUCAUCAAGGCUGCAAAAAAGCAAGAAAAGGAAGAGGAAGAAGAAGAGAAAGAUGAAGACGAAAAGGAGGAGUAGAAAAGAAAAUGAAGAUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-154.4 kcal/mol

Ensemble Metrics

Free Energy: -164.95

Frequency: 0.0000

Diversity: 98.58

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((..(((((.((........((((...(((..((.(((((....))).)).))..)))....))))((((...((((((((.((.(((((....))))).)).))))))))))))((((((((((((..((........))))))))))))))...(((.................))))).)))))......((((((...........))))))((...))...)).))).........((((((((..((((((((((.((((.((((...(.....((..........))....((((...((((......))))...))))........(.((((..(.(((.........))))..)))).).((..(((((.(((.........))))))))..)).......................(((((.(((..(..............)..))).))))).....((((((.....))))))..........)...)))))))).))))))))).)..............))))))))......................

Thermodynamic Ensemble Prediction

.{((({..,((((.({.....,..|{((...(((..((.(((((....))),,).))..)))..,.))))((((...((((((((.((.(((((....))))).)).))))))))))))(((((((((((,.,((........))))))))))))))...{{{.................}}}}}.})}}}....,.((((((...........)))))),,.,}}}...}}.||,.....}}..((((((((..{(((((((((.((((.((((...{..,..{{..........}}....((((...((((......))))...))))........{.((((.,..(((.........))),.,)))).,.((..(((((.(((.........))))))))..)).................,||,|.{,|{|.|,,..|..,,.......{{(({{{{|{,||,......|}|,||}}}.,)))){{......))..,...)))))))).))))))))).,..............)))))))).,,...................