Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-IRX3-80:53

Sequence Length

415 nt

GC Content

0.3711

GCUUCCAUAAUACAUUUGGAUGCUGUCAGCUAAGUUCACUUCUGAACUAAGGGGUUCCUCCAAAUGUUGGCUGAAAUUCAUCCCAAGGCUGGUCUGCAAAGUCUGCAAUUCAUAAUGGAGCUACUGUACUGGCUAUUGGAAGGAGGAGAUUCUGAAGAUAAGGAGAUUCAGCCGUUGGUCUUUGAAAUUUCCUGUGAUGUGUUUCAAUCUAGAUGCAAAGAACAUGGAAAAAUCAAAGUGCUCGAGUGGUUUAAAUAUGUUUUGGGUAUUCCUGUUUAUAGACUAUAAUACUUUUCCAAUUAAAAUCCUCAGUUGUCACGCAGAAGAAGGUUAAGCUGUAUUUGAUUGCCAGUUUUACUGAAAAUGCUUAGUAUUUUACAGUAUCACCAAAUAUAUUUUGUUUAGCCAAGGUAUA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-99.5 kcal/mol

Ensemble Metrics

Free Energy: -106.64

Frequency: 0.0000

Diversity: 138.57

Structure Visualization

Structure Prediction

MFE Structure Prediction

...((((.........))))(((((.(((((.((((((....))))))..((((...)))).......(((((((.(((...(((((((((((..(((.((.((.((........)).))))..)))))))))).)))).((((.....)))).........))).)))))))...(((((((((..((((((((....(((.((......)).)))....))).)))))..)))))).))).(((.(((((.(((.((....(((((((...(((....)))...)))))))...))))).))))))))))))).)).)))......((((((((((((((((.......((..((((((((((((...))))))).)))))..))))))))))....))))))))........

Thermodynamic Ensemble Prediction

{(,{(({.....,.,,||||{(,,.,(((((,((((((....))))))..(({{...)))).....,|||||||,..,|,|||{{{{((((({.,{((.{{,{{.({..,,...,)).))||..}||}}})))},|||},|{{{{,{||||{|{.{{{{.,||||{|||||||{{{(((((((((..((((((((..,.(((.((......)).)))....))).)))))..)))))).)),}||,,|||{,.,,,.,,...,||||{||,,,|||,.,,))}...,))}))),,})}}},.,}}}|}||,}|||,,,.))}}..,..||{{(((((((({{{{..,,..,||..((((((((((((...))))))).)))))..})}}}}}}}}...,))))))))...,,...