Sequence Details

BLAST PRIMER
Symbol
lnc-JMJD7-PLA2G4B-2:13
Sequence Length
400 nt
GC Content
0.5350
AACUCGGCAUCCUGGACACCACCACCCCGCACCUUUCCACAGUGCAGCUCUGCUCGUGCCUGUGAAGCCUCCCACAGCCUGGGAAGGAAAAUCCAGACUUGCCAGACCUUGCCUCAGCCAGGCCUUGGAAGCCUGCCAGCUUACCUAACCAGACCCUCAGCCCAUGGAGUCCUGUGUGAUGUUGUGAGCGUGGGAGGACAGACUGAACUGCUCGGCCCGUGGAGUCCUGUGUGAUGUUCUCAACGGCAGCUAAAGCCACUGCAUACAAUGCAAGGACUGGCUCCUGUUUGGCCACGACUGAUUGCAGCCCCUGGUGAAAUGAGAACCCUGUGGGUCGGAACAAAGUUUGGAUUAUUUAUGUUGCAAGUAACUAAAAUCUCAAGUGAAACUGGUUUAAACA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-111.1 kcal/mol
Ensemble Metrics
Free Energy: -120.8
Frequency: 0.0000
Diversity: 108.58
Structure Visualization
Structure Prediction
MFE Structure Prediction
.(((((((((..(((......))).............(((((.(((..........))))))))...(((((((.....)))).)))..((((((((((((((((.((((((..(((...(((.((((..(((..(((((((((...(((((((((.........)).)).))).))......)))))).)))(((((((.........((((........)))).........)))))))...)))..)))).))).)))........)))))).)))))((.(((((.((((.(.(((....))))...)))).))))).))((((...)))).......)))))))))))....))))))..)))(((((...((......))...)))))......
Thermodynamic Ensemble Prediction
.,{{{(({,,..{((......}}}.........,,,.(((((.(((((...}},.,)))))))),,.(((((((.....))))}}))..((((((((((((((((.((({((....||.|||{.||||..{(({.(((((((((...(((((((((.........)).)),,)).))......)))))).))){|||,((,.,....|}|{{({{,,{{,{||||,{,.|{|,.|||}}}|,..|||..,,,,.)))..}),..,,,.,)))))),))}}}((.{((((.((((.(.(((....)))....)))).))))}.)},|||,.,))))}},....)))))))))))..,,,.||||..,,}|||{|...{{......)}...)))),......
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