Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-KHDRBS3-4:3

Sequence Length

243 nt

GC Content

0.4650

GUUAGGGUCAGGCAGCUUUGAAGUGGAAUCCGGAUCCGCCACUCUCGCUGCGUGAUAUUGGGCAUGCCAUCAAAGCGCUCUCAACCGAACGUCUCGGGAAUUUUCUGGGAAGUUAAGAAUUUCCAAUAAAUCUUGGACUACUCUAAAAUGCACCAGAAAUUACGUGGUCACACUCGUGCAGUGAAAGAAGGCUUUGGCAGUAGCAUAAGACAUUAAGCAGAAGUAGGAAAUGCAGUGAGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-60.2 kcal/mol

Ensemble Metrics

Free Energy: -66.27

Frequency: 0.0001

Diversity: 55.78

Structure Visualization

Structure Prediction

MFE Structure Prediction

....(((((.((...((.......))...)).))))).....(((((((((((..((((..((.(((((...((((..(((...((((.....))))....(((((((...(((.(((...(((((......)))))....)))..)))...))))))).((((.(......).)))).......)))..))))))))))).((.(((....))).))...))))....)))))))))))...

Thermodynamic Ensemble Prediction

,,..(((((.((..{((....,}}}}...)).)))))...,,{((((((((((..{{((,,({.((({,.,,((((..(((...((((.....))))....(((((((,..,((.(((...(((((......)))))....))).,},}.,.))))))).|,{({(....}}).,}}},.,}},.}))..)))))))},,,.{{.{{{....}}}.))...,))}....))))))))))}...