Sequence Details

BLAST PRIMER
Symbol
lnc-MUC22-1:8
Sequence Length
489 nt
GC Content
0.4826
UUUUGUCUCCCUCCGUGAUUCUGAGGCCUCCCCAGCCAUGUGGAACUAAAGAGUGUUUCCUGCCUCCAUUAAAUCCAUCCACCAGGGUUAUUUAUCAUCCCCAUGUCAUGGACUACAGUACACCAUAAAGAGGACCCCAGCAGUGACUACAGUUGGUUCUAGAAAAAGGAGACCCCUCAUCCGCCUCUGCAAGACUAUACAGCAUGAUGUGUAUCCUCAGGCCUCCACUCCUCCGCCCUAGUCUGGAGCCCUGGGACCACCACAUGAGGAAGGCAGCUGGCCCCUGGAAUAAGCAUGUGGAGGACACUCAGAAGGAUGCCCAUCUGCUCUGAGUGUCUCCUAAUUCUGCCUGACCUUGGUUACUUCCUCUGGACAAUCGCCUUUACCUAUCUACCAGGUUUUGAGGAAUUACACACAGCUCAGGUAUAAGAGAUAUUCGGUAAGUCUGAUCAAAUCAAUAAAGCAAAUUUUAUCUGUUUUUGUCUGGGA

Secondary Structure

Generated by RNAfold
Predictions for this specific transcript isoform.
Minimum Free Energy
-128.2 kcal/mol
Ensemble Metrics
Free Energy: -139.29
Frequency: 0.0000
Diversity: 125.66
Structure Visualization
Structure Prediction
MFE Structure Prediction
.........((((.(.....).))))....(((((.((...(((((........)))))....((((((........((((...((((((.((.((.(((.(((((..(((.................(((((...(((((.((....)).)))))...........(((((....)).))).)))))....((.((((((......))))))))((((((.(((((..(..........)..))))).)))))).)))..))))).))).)).)).)))))).))))........))))))((((((((((.((((....))))..)))))))))).........(((((((.((((..((.((((((.((((.......................)))).)))))).))..)).)).)))))))...((.....((((.....)))).....))...((((((.........)))))))).))))).
Thermodynamic Ensemble Prediction
.......,{(({{,{...,,|{||||{,,,({(((,{,.{{(((..{{,.(((.((..,..}}|||,,|,,..}}}}|,,,{{{((((((.{{.((.(((.(((((..(((.................{((((...(((((.((....)).)))))...,.......((({,....)).}}},)))))....,,.((((((......))))))||({((((.(((((..,..........)..))))).)))))),)))..))))).))).)).}}.)))))),))),....,,.,),))))}{|{||||||.(({{....}}}},,||||||||||{{.,.....(((((((.((((,,{(.((((((.{({{.....,,...,,,,.......}}))},.)))))).})..)).)).))))))),}.))))))}}}||..,,,,|||,...|}},,,(((({{....,,,,.))})))}),)}))).
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