Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-NCAM2-1:1

Sequence Length

609 nt

GC Content

0.4269

CUCAGUGUUUUGGGGAACCAGAAACAAACCAAUAAAAUAAAGGCGUGGAAAGGCUACUGUGAGAACAGAAAGGAGCAACUGGGGCACUGAAACAAAAACAACCUGCACAGAAAUUAAAUUGAGCCAGAACGUAAAGAACUGAAGGAAGUGUCUGAUACAGAGAAGAGAGAAAGUACAUUUAGGCCAAAAGAAUCAUCACAGGAUGAACUAACCUUCUGGUUCCAGGAGAAAGACGAGGGACUUGGAAACUGAAUUGUCCCAUCCACUGCAGCUGAAAUCUGCCACCUUAACUUCCUGCAGAGCUUCAAUGAGAAGCAGAGAUCAGCCAAGGGCCUCUGAGCACCUAUUCAACUCACAGAUGUGUGAAUGAUGAUACCGAAUUGCUGCUUUAAACCCCUCAGCUUUGUGGUAGUUACAUGGGAAUAGCUAAUACAAAUAAGUGGUGCAGACCCCGGACACAGAGCUGAUACACAGGAUGUCACUGGGAGAAACAGAGAAAGAGUGUGGUUGUCUCCCCAUAUCUACAGUUUCACAUUCUGGGAUUUCAGUUACCUGCAUUUAACGGAGGUUGUCUGAAAAUAUUAAAUAAAAAAUUCCCAAAGUAAACAA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-142.9 kcal/mol

Ensemble Metrics

Free Energy: -154.03

Frequency: 0.0000

Diversity: 146.7

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......(((((((((.........................(((.(....).))).((((....))))((((.(((((.(.(((((.((............((((...............(((((((((.((.....(((......)))(((((((((..............)))...))))))........(((((....)))))....)).)))))))))))))........(((((((..............))))).)))).))).(((((..(((((...((((.....((....))......))))..)))))..)))))..(((((......)).)))..(((..(((((....))))).))).....)).).))))).)))).......(((((((((((.........((((....((...(((......)))..))....))))..)))))))))))....((((((((.(((((((((..((.(.......).))....)))))).........)))...))))))))...((((((..((((.(.......).))))...))))))...............))))))))).......

Thermodynamic Ensemble Prediction

.....{{(((((((((.(({({{..................(((.{....}.))).((((....}}}}((((.(((((.(.(({{,.{{............,{(({...,.........,({(((((({.{(...,.{((......,,{.((((...}}},.,........,}}.,.}))}}}},.......(((((....))))).....,,|||||}}}})))),,......{{(((((..............))))).}}..,|||,({{({..{{{{{...,{{,..,,,||}},},|{{{{..,,,)}}))}}}..))))),.{{{||,,,.,.)).}}}..{({..(((((....))))).}},.,...)).}.))))).)))).......(((((((((((.........((((....((...(((......)))..))....))))..)))))))))))....,,((((((..,{((((((..({.{.......}.}},,,.)))))).}}})))..,))}},}}}))))))..((((((..((((.(.......).)))).,.))))))...............)))))))),...,,..