Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SGCE-1:2

Sequence Length

360 nt

GC Content

0.3833

CUCUCUAUAGCCCAACCUCCAGGAUUUCAGCACUUCGUGGACAUGGAGGCUGACGAUGGAAAAUAAAAACAACAAGCAAGUGAAACUCCCUGACUUAUCAACCUUACUCAAGAACUAUGCUCCUGUUUAGGUAUGCAGACCUGACUUCUUGACUGCAGAUCCCCCAAAACCAGAAUUGGGUGCUCUGAACAUGCUCAAGAGAAAGUCAAAUUUGAAACCCAUUGUGUUAAAACCUGUUGUAAGGAAAAAAAAAAAAAAAACUACAAAGAACUGUAUUUUGUCAUCGUAAUUACAGAGAUGUAGAAAAACGUGUUUUCUACAAGAUGCAAAAAUAUGUGAGACCUCUUUAUAACACAUGGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-71.14 kcal/mol

Ensemble Metrics

Free Energy: -79.16

Frequency: 0.0000

Diversity: 96.94

Structure Visualization

Structure Prediction

MFE Structure Prediction

.......((((((....((((.((..........)).))))....).)))))(((((((.......(((((...(((((((................................))).))))..)))))((((......))))(((((((((((((((((.(.(((((........))))).).))))..)).).))))))...))))...........)))))))......((((((((((((((................((((......))))(((((.((((((....)).....(((((((((.....))))))))).)))))))))............)))))))))))...)))

Thermodynamic Ensemble Prediction

.......,{(({{..,,((((.{,..,{{,,.,,||,|}}}.,}))})))))|{({(({........,,,,...(({((((,,.......|{,.,...,...,,....,,.,.}}}.}}})..})}},||||...{{{|..((((((((((({{{((((.(.(((((........))))).).))))..}}.).))))))...)))))..}}))....))})))},,....,(((((((((((((................{{{{.....,||||{{{{{,{{,{|,,..,,}},...{((((((((.....))))))))).,,}}||,,,.,,}}},.....)))))))))))...))}