Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC25A39-2:1

Sequence Length

383 nt

GC Content

0.5822

GGCAAGGAGGCAAGGACCCCGUCUCUCCCACGGAUGGGGAGAGGGCAGGAGGAGACCCAGCCAAGUGCCUUUUCCUCAGCACUGAGGGAGGGGGCUUGUUUCCCUUCCCUCCCGGCGACAAGCUCCAGGGCAGGGCUGUCCCUCUGGGCGGCCCAGCACUUCCUCAGACACAACUUCUUCCUGCUGCUCCAGUCGUGGGGAUCAUCACUUACCCACCCCCCAAGUUCAAGACCAAAUCUUCCAGCUGCCCCCUUCGUGUUUCCCUGUGUUUGCUGUAGCUGGGCAUGUCUCCAGGAACCAAGAAGCCCUCAGCCUGGUGUAGUCUCCCUGACCCUUGUUAAUUCCUUAAGUCUAAAGAUGAUGAACUUCUGCCUGGUGCCUGU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-134.8 kcal/mol

Ensemble Metrics

Free Energy: -142.74

Frequency: 0.0000

Diversity: 107.79

Structure Visualization

Structure Prediction

MFE Structure Prediction

((((...(((((.(((((((((((.......)))))))).(((((..((.((((((...(((.(((((..........)))))(((((((((((......)))))))))))..))).....((.(((((..((((((((.(((..((((((((((((((.....((((((((..........((((...)))).(((((............)))))......((((.((((.....))))..))))..................))))))))..)).))))))).)))))..))).)).....))))))...))))).)).))))))))..))))).............(((.......)))....))))))))..))))...

Thermodynamic Ensemble Prediction

((((...((((({(({((((((((.......)))))))).((((({(((.((((((...(((,(((((..........)))))(((((((((({......}))))))))))..|((,,,.,{|.,{(((((,((((((({(,,..|||||||||,||,,.....{((({{{,.......,}}|,,|,,.}})),||(((,...........,,,,,......{{{,.((((.....)))}..||||{....,,,,.,{.,,.,.||}}}}||,,},.}}}}))),,)})}.,))),),,..,,))}}}},,))})))}...))))))))).)))))......|,,||..{{{....},,}},,,.,})})))))..))))...