Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-10:26

Sequence Length

467 nt

GC Content

0.4582

CCCGACAUUUCUUAUAGGAAAUGGAACUCUUCAUAAGGUAUCUGGCCAUGGAGGCAUGGUAUCCGUAACAUCCCCCAAAGGAGCUAAAGAAGAAAUCCACAAUUUACCAUGAGCAUUUCUCGUCUGAAGAUUGCCAAGCGAUUCCUCCAGGACAUUCCUCAAGAUCAAUUUCUGUUCAUCCACCUUGUCCUGGGAGGGACAUCAAUGGGUUUCCAUGUCCUUUGGCUUCUGGUUGAGUUCACUCAGUGGAGAACCCUGGCAAGAGGCAGGAAAAGGGGAGGAAGGUGAAAACCAUCCAUUUCUUGGAGAAGUGCCACGGUGGGGUUGCAAGUCCCAGGAUCAAGUUUUCGAUGUGUCUCUUUUUCCCGUAAAGUGGCUGAAAUCUGAAGCUGAAUCUGCAAGUGUCAUGGAGUCAUUGAAUCUCACAGUCUCAACUGAUAAAAGUUAUUAAAGGUCGUCUGGUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-128.8 kcal/mol

Ensemble Metrics

Free Energy: -138.64

Frequency: 0.0000

Diversity: 163.8

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((((((((....))))))(((..(((((....((((((..(((.....)))..)))))).......(((......)))......)))))..)))......((((.((.(((((((((.((((....((((((.(...((((.((((((((........((.((.....)).))........))))))))(((((((.(((((.((...(((.......)))...)).))))))))).)))...))))...).))))))....))))..((((((.(((.(((....))).))).)))))).))))))))))).))))(((........)))..((((.((((((.(((..(((.((((.......)))).)))....))).))))))((..(((..((..(((((....)).)))..))..)))..))((((......))))......))))))).)).....

Thermodynamic Ensemble Prediction

.({({(((((((,..,|||||((((..{((((....((((((..(((.....)))..))))}).......(((,,...,|||{{{,,,|}}||,,||||...,,{,{{.((,({{{{{|||,|,,|..,,{|{{{,.,.{{(((((((((((((........((.{(.....)).)}........))))))))}))))}..,,..||||||||{{|.,.}}}}||||||}..,{|||,|,.|},,}}}}}},})||||,|,,..}.))))..,{|||||{{{.(((....))).))),)))))),))))))))}}},))||(({,......,)))|(({({.((((((.(((..(((.((((.......)))).)))....))).))))))||,}}||..||,}||{,||.,.}.,|||,,|}.||,|.,|},{{(,,,,..,})}......,},,)}..))}}}..