Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-10:27

Sequence Length

468 nt

GC Content

0.4573

CGACAUUUCUUAUAGGAAAUGGAACUCUUCAUAAGUCUGGCCAUGGAGGCAUGGUAUCCGUAACAUCCCCCAAAGGAGCUAAAGAAGAAAUCCACAAUUUACCAUGAGCAUUUCUCGUCUGAAGAUUGCCAAGCGAUUCCUCCAGGACAUUCCUCAAGAUCAAUUUCUGUUCAUCCACCUUGUCCUGGGAGGGACAUCAAUGGGUUUCCAUGUCCUUUGGCUUCUGGUUGAGUUCACUCAGUGGAGAACCCUGGCAAGAGGCAGGAAAAGGGGAGGAAGGUGAAAACCAUCCAUUUCUUGGAGAAGUGCCACGGUGGGGUUGCAAGUCCCAGGAUCAAGUUUUCGAUGUGUCUCUUUUUCCCGUAAAGUGGCUGAAAUCUGAAGCUGAAUCUGCAAGUGUCAUGGAGUCAUUGAAUCUCACAGUCUCAACUGAUAAAAGUUAUUAAAGGUCGUCUGGUUCAGCCUUCU

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.7 kcal/mol

Ensemble Metrics

Free Energy: -138.68

Frequency: 0.0000

Diversity: 189.46

Structure Visualization

Structure Prediction

MFE Structure Prediction

.(((((((...........((((..(((((...(((...((((((....))))))..........(((......))))))...)))))..)))).....((((.((.(((((((((.((((....((((((.(...((((.((((((((........((.((.....)).))........))))))))(((((((.(((((.((...(((.......)))...)).))))))))).)))...))))...).))))))....))))..((((((.(((.(((....))).))).)))))).))))))))))).))))(((........))).((((..((((((.(((..(((.((((.......)))).)))....))).))))))..))))..)))))))..((((...(((((((..((.((((.((((......)))).....)))).))..))))))).)))).

Thermodynamic Ensemble Prediction

.({(((((((....|}}|||{((.,(({{(...{{,..,((((((,.,,|||||,.,{{,,....{{{,,....||||||.,,|}}||,,|}||,,.,,{,{{.((.({{{{{|||,|,{{.,|,{{(({,.,,||{((((((((((((........((.{(.....)).)}........))))))))}))))}..,,.,}||||||||||},}}},}}|||||}.,.,}}|}}}.|||,|,|}},,,)||||}|,,..,.)))|,,{((((({(({.(((....))).))).}}}|||,|}||}}|||}|,}}}|{{|}.},}..,)))||||{,.,{{{{{.|{{..{||,||||,,,,...}}}).|||,,..}}}.|}}}||,,,}}}{..,|||||{.{({{.|.,{({,,|,,||.|.||},,,||||,..,})}.....,)}},,},.)))))))})})}.