Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-10:37

Sequence Length

426 nt

GC Content

0.4460

CUGAUUUUGGUAGCAUCCUUUGGUCUCUUCUAGUCUGGGAGUCAGAGAAAGUUUGCAUCAAAAUGUCAUCAGGGAUUCAUUUCCAUCAUUUCAAGCAGGGUCAUCUUGGAACAGGACACAGGAUAGCCAAAAACAAUCCAUUGAUACACUUGGUGACAUUAAUUGAGAAAAAAACAAUAUGGUCUGGCCAUGGAGGCAUGGUAUCCGUAACAUCCCCCAAAGGAGCUAAAGAAGAAAUCCACAAUUUACCAUGAGCAUUUCUCGUCUGAAGAUUGCCAAGCGAUUCCUCCAGGACAUUCCUCAAGAUCAAUUUCUGUUCAUCCACCUUGUCCUGGGAGGGACAUCAAUGGGUUUCCAUGUCCUUUGGCUUCUGGUUGAGUUCACUCAGUGGAGAACCCUGGCAAGAGGCAGGAAAAGGGGAGGAAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-116.8 kcal/mol

Ensemble Metrics

Free Energy: -124.96

Frequency: 0.0000

Diversity: 158.19

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((((((..((((.((((((((((((((((......)))...)))))..((((...((((((((((((((((((......)))..............(((.((((((..........)))))).))).......(((....)))....)))))))))))..)))).....))))..(((((....((((((....))))))..))))).......)))))))))))).....))))))..((((((...(((((.....)))))....))))))........(((((((((((...))))..(((......)))((((.(((((.......((((..((((.(((((.((...(((.......)))...)).))))))))).)))))))))))))((((.(....).))))......))))))).

Thermodynamic Ensemble Prediction

,{((((((({(,(({,,(((({{((((((((.....})))}..)))}),,|,,|}}}||||||{{{{|||||{,.,{{.,{{{{.,,.,{{{..,{{{(((.,((({({{{,..{{{.|||||,,|||{,,.,{{{{{{{{|||{.,.||||||||},||..,|||{{,,.,,,,..(((((....((((((....))))))..)))))...,,,.},,,,)))|||,.....|{{||,.....}}}....,,}}}.}}})))},.,,},|,}}}|}}}).}.{((((((((((((........((.{{.....}}.}}.,,.....))))))}}}}))}|,}}}}}}}|}}..,,,})),,)))})}|}}}}}}},.}}}}.,.,,,.))),,))}}|},|..}})}},))},,.))))),)),.