Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-10:40

Sequence Length

480 nt

GC Content

0.4667

GCUCGAGGUACCCACUCCCUGGUAAUCACCUCUGAUUUUAAACUUCCUAACAGUCUGGCCAUGGAGGCAUGGUAUCCGUAACAUCCCCCAAAGGAGCUAAAGAAGAAAUCCACAAUUUACCAUGAGCAUUUCUCGUCUGAAGAUUGCCAAGCGAUUCCUCCAGGACAUUCCUCAAGAUCAAUUUCUGUUCAUCCACCUUGUCCUGGGAGGGACAUCAAUGGGUUUCCAUGUCCUUUGGCUUCUGGUUGAGUUCACUCAGUGGAGAACCCUGGCAAGAGGCAGGAAAAGGGGAGGAAGGUGAAAACCAUCCAUUUCUUGGAGAAGUGCCACGGUGGGGUUGCAAGUCCCAGGAUCAAGUUUUCGAUGUGUCUCUUUUUCCCGUAAAGUGGCUGAAAUCUGAAGCUGAAUCUGCAAGUGUCAUGGAGUCAUUGAAUCUCACAGUCUCAACUGAUAAAAGUUAUUAAAGGUCGUCUGGUUCAG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-127.6 kcal/mol

Ensemble Metrics

Free Energy: -138.77

Frequency: 0.0000

Diversity: 176.64

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((((((((........)))....)))))(((((((.(((((..((.((((..(((..((((..((..(..(((((.((((.((((...(((.............))).......(((.((.(((((((((.((((....((((((.(...((((.((((((((........((.((.....)).))........))))))))(((((((.(((((.((...(((.......)))...)).))))))))).)))...))))...).))))))....))))..((((((.(((.(((....))).))).)))))).))))))))))).)))))))(((((........(((..((((((.(((..(((.((((.......)))).)))....))).))))))..)))))))))))).)))))..)..))..)).))..)))...)))).)).)))))....)))))))..........

Thermodynamic Ensemble Prediction

....(((((({(.......,))}....})))),{{{{{{,,{{{,..,..{{{{..{(({,(({{,.|{,||,.(((((.{({(,((({...(((.,{......,...}}}......,{{{.((.({{{{(({{.,{{{..,,{{(({{.,,{{(((((((((((((........((.{(.....)).)}........))))))))})))}|..||..|((||{{|{{{,.,|||||||{{|,.,,{|||,|,,||,,}}}}}},})||||}|,,..,.)))}..{(((((,(((.(((....))).))).}}||||,|}||}}|||}|,}}}}}})|,|||..,}}|||||({.{({(((,({{..(((.((((.......)))).))),.,,))).))))))},.,}}},,})))).)))))..),,)),.}},},,,}|},.,}})).,,.,}))}..,,,})))))..,},,.,..