Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-10:9

Sequence Length

520 nt

GC Content

0.4692

GGGGUGCUGCGGGGAAGGCGGGGGACCCGGGACUUCCAAGUGUCCAAAAACAAUCCAUUGAUACACUUGGUGACAUUAAUUGAGAAAAAAACAAUAUGGUCUGGCCAUGGAGGCAUGGUAUCCGUAACAUCCCCCAAAGGAGCUAAAGAAGAAAUCCACAAUUUACCAUGAGCAUUUCUCGUCUGAAGAUUGCCAAGCGAUUCCUCCAGGACAUUCCUCAAGAUCAAUUUCUGUUCAUCCACCUUGUCCUGGGAGGGACAUCAAUGGGUUUCCAUGUCCUUUGGCUUCUGGUUGAGUUCACUCAGUGGAGAACCCUGGCAAGAGGCAGGAAAAGGGGAGGAAGGUGAAAACCAUCCAUUUCUUGGAGAAGUGCCACGGUGGGGUUGCAAGUCCCAGGAUCAAGUUUUCGAUGUGUCUCUUUUUCCCGUAAAGUGGCUGAAAUCUGAAGCUGAAUCUGCAAGUGUCAUGGAGUCAUUGAAUCUCACAGUCUCAACUGAUAAAAGUUAUUAAAGGUCGUCUG

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-150 kcal/mol

Ensemble Metrics

Free Energy: -160.13

Frequency: 0.0000

Diversity: 156.6

Structure Visualization

Structure Prediction

MFE Structure Prediction

.((((.((.((.......)).)).))))(((((((((((((((.(((..........)))..))))))))........................(((((....((((((....))))))..))))).((.((((....(((.............))).......(((.((.(((((((((.((((....((((((.(...((((.((((((((........((.((.....)).))........))))))))(((((((.(((((.((...(((.......)))...)).))))))))).)))...))))...).))))))....))))..((((((.(((.(((....))).))).)))))).))))))))))).))))))).)).)))))))..((((.((((((.(((..(((.((((.......)))).)))....))).))))))((..(((..((..(((((....)).)))..))..)))..))((((......))))......)))).....

Thermodynamic Ensemble Prediction

.((((.((.((.......)).)).)))){(((({,((((((((.{,,..........}})..)))))))){(((({,..,{{{{,.........(((((....((((((....))))))..)))))...{((((,..{((({(({{{{..{{{{{||,,,.,,,,,,,((,({{,{{|||,|.,|.,}}|||{,,.,.{|(((((((((((((........((.{(.....)).)}........))))))))}))))}..,,..}||}}}|},,,.,.}}}))}}|}}}..,{||{,{,.|},,}}}},,,}}|{{{.|....}.))))...,||||}(((.(((....))).))).,,||||{|,||,,|||,|{,,,,,,)).)})..))))}))|((.{(((((.(((..(((.((((.......)))).)))....))).))))))||.,||,,,||}}||||,{|{.|,.|||..}),.}}).,))|{{{,,,...}))),,,...))}}.,,..