Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-1:27

Sequence Length

227 nt

GC Content

0.4758

CAGCAUUCUCAGGGCCUUCUGCCAAGGGCCCGCUUUGAUCUCCCUUAAAGGACAGCAUUAUCUGACCAGAGGAACUCUGAAAGCCACAUGUUGAGAUGGCCCCAUUACAGGAUGGAGAGCACCUGAACCCCCAAGUUAUGGACUAGAAGAAGACAGUUGCCCUGGAAAAUCAUCUGACCCACAUUGGACUUUAUGUGAGGGGGAAAUAAACCUUUAUUAUGUUAAGC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-53.7 kcal/mol

Ensemble Metrics

Free Energy: -58.43

Frequency: 0.0005

Diversity: 81.13

Structure Visualization

Structure Prediction

MFE Structure Prediction

..((..((((((((((((......)))))))(((((.(....((((...((.(((......))).)).)))).....).))))).......)))))..)).......((((.((.....))))))..(((((.......((..((((.((...(((.....))).....)).)))).))(((((........))))).)))))........................

Thermodynamic Ensemble Prediction

.,((,,,,,{,(((((((......})))))),{{{{,,,,{{({{{,.,||.(((,,....}}}..(((((...))))).,}||,,.,|}|}}}|,||}},|{{{{.{{{|,||}.,.,)}}}}}..{,,((,,,,,.,||.,{{{{.{{...{{{.....))).....}).)))}.,|{|{{|,,,.....}}})),)))))..,,,..,,.}}},,,}}},....