Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-SLC39A11-1:29

Sequence Length

657 nt

GC Content

0.4612

UUCUCAGGGCCUUCUGCCAAGGGCCCGCUUUGAUCUCCCUUAAAGGACAGCAUUAUCUGACCAGAGACCCAUGCAGGAGACCUCUCCAGGUACACAUAUUUCCUGCUACUGAAUGGCUUAGACUGGGAUUUGCAAGGAACUACGAAGUCCAAGACCUUUGCCUUUCUUUUAGAAGAAGGCACCAGCUGGUUCUCCAAUGUUGAAGGUCUUCUCCAGAGAUGGGCAUGCAGAAGGAGUGAAAAAACAAGAAGGAAGACAAGGAAGACAUUGUUUUGGCUGCUGACAUUUCCUGAAAGAUCUGAGGCGUCCCCUUCACUUCGGGCAUGGGACCCAGACGGCUGAGUGAUGGACCUUAAGGUGUGGGGAGAUUACAACUUGCUCAAGGUCUCAUAGCUAGAAGAUGUCAGAGUGAUAACUCAAACCAUGUCACAUGACUCUAAGCCCAAAGCAGCCUCUAGAAGGUUGUUUGAUCUUCUGAUGGAAGCACAAAUCACCAUUCCAACAUGAAAGAUGGAGAAACUUAAGUCUAGAGAGAUUUAAAGGACUUGUCAAAGGCAAUGAAACAAGUGAUGAGGAAACUGAGGCCCAGAGAGGAUAAAUGACUUGCUCAAGGUUAGCCAGUUGGUCAAUGGCAAAGAUUAAACCAGAACCCAGAUC

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-184.5 kcal/mol

Ensemble Metrics

Free Energy: -196.66

Frequency: 0.0000

Diversity: 231.32

Structure Visualization

Structure Prediction

MFE Structure Prediction

......(((((((......))))))).((((((......))))))..........((((((((.........(((((((((((....))))........))))))).......))).)))))(((((.((((...(((.((....))))).....(((((((((((((....))))))..((((((((((((((((((.((((.(((((((.((((...(((((((((....((((((((............(((((((........)))))))((.((((..((..((......))..)).)))).))..))))))))..)))))...)))).....))).).)).))))))))).)).))))))........(((.(((..(((((((..(((...(((.((((..((((((..........)))))).))))))).)))...(((((((((.....))))))))).((((((((.(((((.............))))).)).).)))))........((((((((....))))))))....(((((((...(........)...))))))).....)))))))..)))))).....((((((.....))))))))))))))))....))))))).......)))).)))))...

Thermodynamic Ensemble Prediction

,{{{{.(((((((......})))))),(((((.,,(,(,{,...}}.,,{,,...((({,{{{..,,...,,(((((((((({....}))}.......,}))))))..,,,..}}},|}}},(((((.{{{,...((,,((....))))),{{{{(((((((((((((....)))))))}|,(((((((,,..|||..}}}}|}||||||,.||||.,.|||||||||}}.}|,||{||,....,...,,|},||||||,,....{.|||||||,(((,,(((((..(({{...{||{{{|.||,|{|||,}}|,||||.|}|||)|||))),...,{|||,|{||{|||||||,|,,|,|||},...}}}}..|||,|||.,}}||||}}.|||.,.{{{.((((..((((((..........)))))).))))))).,}}.....|||||((((((({((({.|((.((((((((.(((((.............))))).)).)}}}))).)),.}})}|..,||}}}}}))))))..)))},,|||}}..}})...}},})}}}),.}}}},..,|||,||||..||||||.....,{{|||.}},.,)))),}})))))|||...|||},,,,......,)),,.))},}...