Forensic RNA Knowledge Base

Sequence Details

Symbol

lnc-TM4SF20-1:7

Sequence Length

419 nt

GC Content

0.3819

CUAAGUGGAACUUCUUUUGAGGUUAAUGUUUAUAUACAAUUACUUUAACAUUGGAUUUGGGAAAUGGAACAACAUACUGCGGAUCUUUCUGCUACCGAUGAAAGAAGAAGGUUGAGUUUUACCUUCUAGAGCUUUACAGUGUAAACAAGCAGUAUUAGGGUUUGUUUUUACCUUCUCCCCUUUGGCCCCGUCACAGAAGCACUGGCCUUUGUCUUUACAGACACAACCCUAGGAAGAGGGAAAGAGAAAGGGUUUUGUUUAGAAACAGCUGAAUAAAUCCCAACCGGCAGGGUAAAAGCAAAUGCAUUUCUCUGUUCUUCGAGUAUUGGACACUAUCUGUUAGGAGCCAGGUGACCUUGUAGCAAUAUAUCAAUAGAAAUAUAUCAAUAUAUGAAUAGCAAUAAAGUAGAAAACUGAGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-97.5 kcal/mol

Ensemble Metrics

Free Energy: -106.11

Frequency: 0.0000

Diversity: 122.5

Structure Visualization

Structure Prediction

MFE Structure Prediction

((.(((..((((((....))))))((((((................))))))(((((((.(..(((......)))..).)))))))(((((((.((((((...(((((..((.((((((((.....)))))))).)).(((.((((((((.........)))))))).))).(((((((((((((((..(((......).)).))))..(((((....)))))...........))))))...))))).(((.(((((((((......))))))))).))).....((((((.(((.((....)).))))))))))))))...))))))....((((((........))))))...((((....((((((..(((......)))..)))))).....))))...))))))).))).)).

Thermodynamic Ensemble Prediction

{{.(((..((((((....)))))),,(((,.....,,...||,,{,|}}}}}{{{,,,({(,,(((......}||,,|{|}}}||{((({{{,.,,|,,|}}}||(((((((........)))))))...{|{{,{{.,,}}},},.,))}}},,..{.((((((((((((((({((((((({((((..(({......).,}.))))..(((((....)))))...{{,...,.}}))))...}}}}..(((.(((((((((......))))))))).))).....,.,)))))))))))))).),}}}}})||||}|||{.{||||||....,,{{(({{,.,,{,}|||,,..}}|||,,}.{((({(..{{{,.....)}),,))))})},,.,))}.,,,))))},,.))).}}.