Basic Information
Symbol
GKN1
RNA Class
mRNA
Alias
gastrokine 1
AMP18
CA11
BRICD1
BRICHOS domain containing 1
FOV
foveolin
gastrokine-1
18 kDa antrum mucosa protein
Gastrokine-1
AMP-18
Protein CA11
Location (GRCh38)
2:68974573-68980980
UCSC Genome Browser
Transcripts
Secondary Structure
MANE Select
NM_019617.4
Sequence length
753 nt
GC Content
0.4250
Secondary Structure
Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-203.3 kcal/mol
Thermodynamic ensemble
Free Energy:
-218.39 kcal/mol
Frequency:
0.0000
Diversity:
256.37
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((.(((...(((...((((.........((((((((((..(((...)))...))))))))))((((.((((.(((((((((((.(((.((((((..(((..(............((((....))))............)..))))))))).)))..((...((((((((.((..(((...)))..)).))))))))...))...))).)))))))).)))).))))....))))...)))...)))((((.((((..((...(((((.....)))))..)).....))))))))..((((((((((((((((((((...(((....(((((((......)))))))....))).....)))))).....((.(((((....)))))...))((((..((((((((((((............((.((((((((.(((((((.......))).))))...)).).))))).)).............))))))))....))))..))))...((((..........))))..((((.(((((.....))))).))))((((((.....(((((..(((((....))))).))))).....))))))........(((...)))((((((....))))))..((((((.(((((((...((((.....(((((....))))).....))))...))))))).))).)))......))))))))))..))))..............)))))....
Thermodynamic Ensemble Prediction
.((((,((({{{(((,,,((((({.......|||{{|||{{,.,((,,,|||{{,,}}}}})))}}}}}}|||,.(((({({.,,,,|||}|,((,{.,{{,..,............((({....)))).........,.,)}.}))))))))}),|{{((,..((((((((.((..(((...)))..)).))))))))...},..,(({(((|||{{|.|)).}))))}}}}||||,,,|||...|||{{{{,{{{,.,}|,..(((({.....)))}}..||{.,,,}}}}.....|{,{|||{{|||||||{{|{(||,{,(,,{,({{(({(,,,.,,}|}}}}}....}}}.,,,,}||}}}.|||,||.(((((....)))))...||{,|({{{,..,{||||||.}}}.......,|,,,||||,|||({{,{{{,,.....,,}.}}}}...(((((((.{(((....))}.,))))))).{{|||,,{{.,.|{.|||,...)}},}},,}},.}})))},,|{{{,{{(({,,,,,))))).}}})||||||,,,..(((((..(((((....))))).))))).....}}}}}}...{{{,.(({...})),|||||,,,}},||((({((((((.(((((((.,.{(((.....(((((....))))).....})),...))))))).))).))},))))})|||||}}||..},,,,,...,,,,,....}})))}},.
Transcripts
| ID | Sequence | Length | GC Content |
|---|---|---|---|
| NM_019617.4 | AUGCUUGCCUACUCCUCUGUCCACUGCUUUCGUGAAGACAAGAUGAAGU… | 753 nt | 0.4250 |
Summary
The protein encoded by this gene is found to be down-regulated in human gastric cancer tissue as compared to normal gastric mucosa. [provided by RefSeq, Jul 2008]
Forensic Context
No forensic context available.
Genomic Tracks
