Basic Information

Symbol
RPS15
RNA Class
mRNA
Alias
ribosomal protein S15 RIG MGC111130 S15 uS19 40S ribosomal protein S15 homolog of rat insulinoma insulinoma protein small ribosomal subunit protein uS19 Small ribosomal subunit protein uS19 RIG protein
Location (GRCh38)
19:1438354-1440497 UCSC Genome Browser
Transcripts
NM_001018.5
BLAST PRIMER
NM_001308226.2
BLAST PRIMER
External Database
HGNC NCBI Ensembl UniProt OMIM GTEx

Secondary Structure

MANE Select
NM_001018.5
Sequence length
501 nt
GC Content
0.6128

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-188.3 kcal/mol
Thermodynamic ensemble
Free Energy: -195.59 kcal/mol
Frequency: 0.0000
Diversity: 167.48
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
....((.((((...(((......)))..)))).)).......(((.((..((.(((((((.....((((..((......)).)))).((((.((((((...((((((((.(((((..((((.((.((((.(((.((........))))).))))(((((((.((....(..(((((((((((....(((((.....)))))...))))...)).)))))..)....)).))))))).(((((((((((((.((((((..((((((((((((.(..(((.(((.((......))))).)))..).))).)))..)))))).....(((..((.(((((......))))).))..)))(((.....))))))))).))..)))...)))))))).........)).))))..))))).)))))..))).)))))))))).........))))))).)).))))).(((.(((((...(((......))))).))).)))....
Thermodynamic Ensemble Prediction
....((.,((((({(((...,{{,,,...}}},|)}}}}|,}|||}{{..((,,,,(((({...}}}||..,|}}..,,.,.||||.((((.({{{{{.,,((((((((.(((((..{{{{.((|((((.,{|,||},,...,,|}||},|}}}(((((((.((....(..(((((((((((...,((({{.....))))}...))))..})),}))))..}....)).))))))).,{(((((((({((,(((((({.(((((({(((((.{..(((.(((.{(......}}))),))),.}.))).))),.)))))).}...(((..((.(((({......})))).))..))){({.....}}|||||}}.}}||)|}..,|)))))}}.........)),))}}..)}})),))|||,{}}}.})})))))}})),},..}}),))))).})}.}},..{{{.{((((...{{{......))))).))).}}}....

Transcripts

ID Sequence Length GC Content
NM_001018.5 CAAAGCGAUCUCUUCUGAGGAUCCGGCAAGAUGGCAGAAGUAGAGCAGA… 501 nt 0.6128
NM_001308226.2 CAAAGCGAUCUCUUCUGAGGAUCCGGCAAGAUGGUGAGUGUUGCGAUUU… 653 nt 0.6325
Summary

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S19P family of ribosomal proteins. It is located in the cytoplasm. This gene has been found to be activated in various tumors, such as insulinomas, esophageal cancers, and colon cancers. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]

Forensic Context

No forensic context available.

Genomic Tracks
Track Image