Basic Information

Symbol
RPS18
RNA Class
mRNA
Alias
ribosomal protein S18 KE3 KE-3 HKE3 S18 uS13 D6S218E small ribosomal subunit protein uS13 40S ribosomal protein S18 rhabdomyosarcoma antigen MU-RMS-40.21 Small ribosomal subunit protein uS13 Ke-3 Ke3
Location (GRCh38)
6:33272075-33276511 UCSC Genome Browser
Transcripts
NM_022551.3
BLAST PRIMER
External Database
HGNC NCBI Ensembl UniProt OMIM GTEx

Secondary Structure

MANE Select
NM_022551.3
Sequence length
549 nt
GC Content
0.5228

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-182.1 kcal/mol
Thermodynamic ensemble
Free Energy: -192.39 kcal/mol
Frequency: 0.0000
Diversity: 100.42
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
.......(((.(((((((((((.........(((((((((..(((((.((((.(((((((((((...........((...(((((.....((((((((((.....(((((..(((........)))....)))))...(((......)))((((((.........)))))).))))))))))....)))))...)).((((.....)))).)))).))..))))))))))))..(((((..(((((((....)))))))....)))))))))))))))).....(((((..((((((......((((((((((((..((.((.......)).))..((((..(((...)))..)))).....((((((........))))))..(((((.....)))))((((.....)))))))))).)))))).(((((.((....))))))).(((((((........(((((.....))))).......))))))).))))))......)))))))))))))...(((((....)))))........))).))).
Thermodynamic Ensemble Prediction
.......,,({(((((((((((,.{{.{{.{({{{{||{||.||({(.((((,((((((((({(...........{,...(((((.....((((((((({,({..,{((((((((........))),{,{||.,(((.{((......))))}|)}|.,,......)))))))))))))))))....)))))...,}.((((.....)))).})))}},..))))))})))))..(((((.,(((((((....})))))).,..)))))}||}||}||||...,.,{{{|}}{(((({......((((((((((((..((.((.......)).))..((((..(((...)))..)))).....((((((.,......))))))..(((((.....)))))((((.....)))))))))).)))))).(((({{((....))))))).(((((((.....,,,(((((,...,)))))....,},))))))).)}}}}}......,}))))))))))),..||||.....,||||........,}}.}},.

Transcripts

ID Sequence Length GC Content
NM_022551.3 CUCUCUUCCACAGGAGGCCUACACGCCGCCGCUUGUGCUGCAGCCAUGU… 549 nt 0.5228
Summary

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S13P family of ribosomal proteins. It is located in the cytoplasm. The gene product of the E. coli ortholog (ribosomal protein S13) is involved in the binding of fMet-tRNA, and thus, in the initiation of translation. This gene is an ortholog of mouse Ke3. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Forensic Context

No forensic context available.

Genomic Tracks
Track Image