Basic Information

Symbol
RPS29
RNA Class
mRNA
Alias
ribosomal protein S29 S29 uS14 DBA13 small ribosomal subunit protein uS14 40S ribosomal protein S29 Small ribosomal subunit protein uS14
Location (GRCh38)
14:49570984-49599164 UCSC Genome Browser
Transcripts
NM_001030001.4
BLAST PRIMER
NM_001032.5
BLAST PRIMER
NM_001351375.2
BLAST PRIMER
External Database
HGNC NCBI Ensembl UniProt OMIM GTEx

Secondary Structure

MANE Select
NM_001032.5
Sequence length
295 nt
GC Content
0.4610

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-80.8 kcal/mol
Thermodynamic ensemble
Free Energy: -87.62 kcal/mol
Frequency: 0.0000
Diversity: 44.56
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
..............((((((((((((.((.(......).))..)))))).)))((.(((((.((((((.........))..))))....))))).))((((((.((....)).))))))((((((..((((((((((((..((.....))..)))).)))))))))))).))(((((((((((((((((((((.(((.(((.....((((((((((....))))......)))))))))))).)))))..))))..))).)))))))))..........))).............
Thermodynamic Ensemble Prediction
.....,{{{....,{,{(((((((((.((.(......).))..)))))).)))}|.{((((.{(((((((....}},,}..))))....))))}.},((((((.((....)).))))))((((((..((((((((((((..((.....})..)))}.)))))))))))).))(((((((((((((((((((((.(({,(((.....((((((((((....))))......)))))))))))).))))),.,)))..))),,))))))))................,}},,.....

Transcripts

ID Sequence Length GC Content
NM_001030001.4 CUUCCUUUUACCUCGUUGCACUGCUGAGAGCAAGAUGGGUCACCAGCAG… 7062 nt 0.4283
NM_001032.5 CUUCCUUUUACCUCGUUGCACUGCUGAGAGCAAGAUGGGUCACCAGCAG… 295 nt 0.4610
NM_001351375.2 UGGCAGCGGUGGUUGUUUCUGUUCGGGGAGGAUUCCGAGGGUUUCAGCU… 510 nt 0.5196
Summary

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit and a member of the S14P family of ribosomal proteins. The protein, which contains a C2-C2 zinc finger-like domain that can bind to zinc, can enhance the tumor suppressor activity of Ras-related protein 1A (KREV1). It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2013]

Forensic Context

No forensic context available.

Genomic Tracks
Track Image