Forensic RNA Knowledge Base

Sequence Details

Symbol

NM_001394862.1

Sequence Length

1227 nt

GC Content

0.5860

AGCACAGAGUUGGGAGUGACUCCAGAGCCUCCAGCAAGAUGCUACUGAUUCUGCUGUCGGUGGCCCUGCUGGCCCUGAGCUCAGCUCAGAGCUUAAAUGAAGAUGUCAGCCAGGAAGAAUCUCCCUCCGUAAUAUCAGGAAAGCCAGAAGGACGACGCCCACAAGGAGGAAACCAGCCCCAACGUACCCCACCUCCUCCAGGAAAGCCAGAAGGACGACCCCCACAAGGAGGCAACCAGUCCCAAGGUCCCCCACCUCGUCCAGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCACCUCGUCCGGGAAAGCCAGAAGGACAACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCACCUCGUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCGCCUCGUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCGCCUCGUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCGCCUCAUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCACCUCGUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCACCUCGUCCGGGAAAGCCAGAAGGACCACCCCCACAAGGAGGCAACAAACCUCAAGGUCCCCCACCUCGUCCAGGAAAGCCAGAAGGACCACCCCCACAAGGAGGAAACCAGUCCCAAGGUCCCCCACCUCGUCCAGGAAAGCCAGAAGGACCACCUUCACAAGGAGGCAACAAACCUCAAGGUCCCCCACCUCAUCCAGGAAAGCCACAAGGACCACCCCCACAAGAAGGUAACAAACCUCAACGUCCCCCUCCUCCAGGAAGGCCACAAGGACCACCCCCACCAGGAGGCAAUCCCCAGCAGCCUCUGCCACCUCCCGCUGGAAAGCCCCAGGGACCACCUCCACCUCCUCAAGGGGGCAGACCACACAGACCUCCCCAGGGACAGCCUCCCCAGUAAUCAAGGUUCAAUGACAGGAAGUGAACAAGAAGAUGACAGUGAUUCAAAUGAUUCAAAUGCCAUGACAUUGGAAGAAGGUGGUCAUAGCUCUACCUUUAAUAUACCAAUAAAAUAAACAGCUUACAAUUUCUGA

Secondary Structure

Generated by RNAfold

Predictions for this specific transcript isoform.

Minimum Free Energy

-334.6 kcal/mol

Ensemble Metrics

Free Energy: -358.58

Frequency: 0.0000

Diversity: 416.38

Structure Visualization

Structure Prediction

MFE Structure Prediction

....((((((((..((((((..(((((.(...((((...))))...).)))))..)))(((((.(((.((((((((((((((......)))))).......(((((.....(((.((...)).))).....))))).((....))....((((((........((((((......((......))......))))))...((...(((....((((...((((....)).))......))))...)))...))...)))))))))...))))).))).))))).......(((((......(((((.(((((..((.(((.((..(((....((....))....)))..)).))).)).............((((..((.(((.((..(((....((....))....)))..)).))).))......((((...(((..((((.......))))...)))....))))..(((((...((((((......((((...(((..((((.......))))...)))....))))...........(((((......(((((..(((((...((((..((((((....((....))....)))......((((((............(((((.........(((.(((.........(((((....((....)).(((......)))...))))).........))).))).........)))))...........((((.......))))..(((((.........(((.(((.........(((((...((.((.(((.((..(((........)))..))..))).))...)).......(((((....))))).....((((.......))))..))))).........))).))).........)))))............((((.....))))...........)))))).))))))).....)))))....(((.(.(((((.........((((...))))..))))).).))).........)))))..))))).))))))...)))))..)))).....))))).....)))))..)))))((.........))(((((((.((((...((((((.(((...........)))...)).))))....)).)).))))))).((((((((........)))))))).....................)))..))).))))).

Thermodynamic Ensemble Prediction

....((((((((.{(({({(..(((((.{...((({...,))}...).})))),,)}}(((((.(((.(((((,(((((({{.,,,,,)}}}}},......{{{{{.,,,..(({.,....},),|||...}}}}}.{{....}}....((((((.{,,,...{(((((......{{......}}......))))))...||...,||....(((({.,{,({....)).||...,,.}}}}...|||...,..},)))))).||...})),}.,||,||,}|,,,....||,((....,.{{{{,..|||,.,|,.|||.||..|||....{{....)),|..|||{,,,.,)).||......,|||...|||||,,,.,,|.||,,|||...,||....||||,.|||{,....}}.||......||||...|||||{{{|,.,.,},}}}}...}||....))|}}.||{{,....||,||......{{||...|||{|{{{{,.,..,,}}|}...,||....))}},.||{{{...,||{||......{{{{,..((({{{{{(.......})))...,}}....))}},.,{{{{...,||,((......,{{{...|||{{,,..,,,.,|,,|||,..,,,....|||||.,{{{,...,||.{{......,|||...|||||.....,,..||||||,...,,....|||||..........}((((.......}}}}..|||||.........{{{.|||.........|||||..,,{,...,||.((..,,,..,,,...|||{{.,..,,,..|{{.||,......(((((....))))).....((((.......))))..)))}}.....,,..))).))).........)))))..........{.{(((.....))))}...,,...{|||||...||,.||{,....)),))..,,,....,|||||,........(({{...))}}..,,,,,.}||}}...,,.,,.)))))..,,,,,.))))))...)))))..,........}}))).....))))).,))))),,.,.......}|(((({({.{{{{...{{{{{{.,,..{{.....|,,}}|...}).})))....)).)).}))))),.((((((((........)))))))).....................))),.)))}}}))).