Basic Information

Symbol
RNU6-1
RNA Class
snoRNA
Alias
RNA, U6 Small Nuclear 1 U6-1 U6 RNA, U6A Small Nuclear RNU6A RNU6
Location (GRCh38)
15:67839939-67840045
UCSC Genome Browser Search in Marker Scope
Forensic tag(s)
Tissue/body fluid identification
External database
HGNC NCBI Ensembl OMIM RNAcentral

Sequence & Structure

Transcript
RNU6-1
Sequence length
106 nt
GC content
0.4623

Secondary Structure

Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-26.30 kcal/mol
Thermodynamic ensemble
Free energy: -28.50 kcal/mol
Frequency: 0.0282
Diversity: 10.08
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((.((....))))))).......((((((((((((...((..(((.....((.((...(((.....)))....)).))...))).))...))))))).)))))
Thermodynamic Ensemble Prediction
(((((.((....))))))).......,(({{(((((((...({..(({..{{.((.((...(((.....)))....)).)).},))).))...))))))).}))},
Summary

No relevant information is available at the moment.

Forensic Context

A study in human body fluid samples demonstrated that the RNU6-1 was excluded from analysis as a candidate reference gene due to scarce unspecific amplification in RT(-)-controls [Sauer et al. DOI:10.1016/j.fsigen.2014.08.005].