Basic Information
Symbol
SNAR-F
RNA Class
snoRNA
Alias
Small NF90 (ILF3) Associated RNA F
Small Nuclear ILF3/NF90-Associated RNA F
Small ILF3/NF90-Associated RNA F
Small NF90-Associated RNA F
Location (GRCh38)
19:50604963-50605085
Forensic tag(s)
Other applications
External database
Sequence & Structure
Secondary Structure
Generated by RNAfold
Minimum free energy (MFE) structure:
Secondary structure that contributes a minimum of free energy.
Secondary structure that contributes a minimum of free energy.
Ensemble properties:
Thermodynamic properties of the Boltzmann ensemble.
Thermodynamic properties of the Boltzmann ensemble.
Minimum free energy
-51.60 kcal/mol
Thermodynamic ensemble
Free energy:
-55.22 kcal/mol
Frequency:
0.0028
Diversity:
32.39
MFE Structure Visualization
Structure Prediction
MFE Structure Prediction
(((((((((...)))))))))(((((((.(((.(((((((.((((((........)))))).)))))))...........)))))).))))(((((....)).))).................
Thermodynamic Ensemble Prediction
(((((((({...}))))))))(((({{(,{{{.(((((((.((((((........)))))).)))))))...,.|,,,|.|||||,.,}))}|}|,}}}))}.,{((((({....,)))))),
Summary
No relevant information is available at the moment.
Forensic Context
A study in primates demonstrated that the SNAR-F is located at the putative parental locus on chromosome 19 in the human genome, where it replaces a truncated element found in orangutan and macaque [Parrott, Andrew M.; Mathews, Michael B. DOI: 10.4161/mge.18478]. This research, which traced the evolutionary history of the snaR family from retrotransposon ancestors, found that the SNAR-F is not determined to be transcribed [Parrott, Andrew M.; Tsai, Michael; Batchu, Priyanka; Ryan, Karen; Ozer, Harvey L.; Tian, Bin; Mathews, Michael B. DOI: 10.1093/nar/gkq856].